U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    p4ha1b prolyl 4-hydroxylase, alpha polypeptide I b [ Pangasianodon hypophthalmus (striped catfish) ]

    Gene ID: 113545015, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    p4ha1b
    Gene description
    prolyl 4-hydroxylase, alpha polypeptide I b
    Locus tag
    PHYPO_G00012550
    See related
    EnsemblRapid:ENSPHYG00025002916
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pangasianodon hypophthalmus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See p4ha1b in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 10 NC_069719.1 (3749873..3771601)

    Chromosome 10 - NC_069719.1Genomic Context describing neighboring genes Neighboring gene uncharacterized si:ch211-248a14.8 Neighboring gene serine/threonine/tyrosine interacting-like 1 Neighboring gene actinin, alpha 2b Neighboring gene ryanodine receptor 2b (cardiac)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_069719.1 Chromosome 10 Reference fPanHyp1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-proline 4-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    prolyl 4-hydroxylase subunit alpha-1b

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPanHyp1.pri

    Genomic

    1. NC_069719.1 Reference fPanHyp1.pri

      Range
      3749873..3771601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034307922.2 → XP_034163813.1  prolyl 4-hydroxylase subunit alpha-1b isoform X3

      UniProtKB/TrEMBL
      A0A5N5N3J8
      Related
      ENSPHYP00025005537.1, ENSPHYT00025006472.1
      Conserved Domains (2) summary
      smart00702
      Location:348 → 521
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
      pfam08336
      Location:25 → 112
      P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region

    2. XM_034307921.2 → XP_034163812.1  prolyl 4-hydroxylase subunit alpha-1b isoform X2

      UniProtKB/TrEMBL
      A0A5N5N3J8
      Related
      ENSPHYP00025005543.1, ENSPHYT00025006478.1
      Conserved Domains (2) summary
      smart00702
      Location:357 → 530
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
      pfam08336
      Location:34 → 121
      P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region

    3. XM_053237656.1 → XP_053093631.1  prolyl 4-hydroxylase subunit alpha-1b isoform X1

    4. XM_034307923.2 → XP_034163814.1  prolyl 4-hydroxylase subunit alpha-1b isoform X3

      UniProtKB/TrEMBL
      A0A5N5N3J8
      Related
      ENSPHYP00025005545.1, ENSPHYT00025006480.1
      Conserved Domains (2) summary
      smart00702
      Location:348 → 521
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
      pfam08336
      Location:25 → 112
      P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases