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    Zfp640 zinc finger protein 640 [ Mus musculus (house mouse) ]

    Gene ID: 102636110, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Zfp640provided by MGI
    Official Full Name
    zinc finger protein 640provided by MGI
    Primary source
    MGI:MGI:2678025
    See related
    AllianceGenome:MGI:2678025
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mzf6d
    Summary
    Acts upstream of or within several processes, including face morphogenesis; fibroblast migration; and positive regulation of fibroblast migration. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See Zfp640 in Genome Data Viewer
    Location:
    13 B3; 13 34.53 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (66817010..66828867, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (66670274..66680803, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53203 Neighboring gene STARR-seq mESC enhancer starr_34877 Neighboring gene STARR-seq mESC enhancer starr_34878 Neighboring gene predicted gene, 46429 Neighboring gene STARR-seq mESC enhancer starr_34879 Neighboring gene STARR-seq mESC enhancer starr_34880 Neighboring gene predicted gene, 18412 Neighboring gene STARR-seq mESC enhancer starr_34881 Neighboring gene vomeronasal 2, receptor, pseudogene 106 Neighboring gene predicted gene, 40988 Neighboring gene STARR-seq mESC enhancer starr_34883 Neighboring gene predicted gene, 52033

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MZF6D, a novel KRAB zinc-finger gene expressed exclusively in meiotic male germ cells. Looman C, et al. DNA Cell Biol, 2003 Aug. PMID 14565865
    2. Identification and validation of PDGF transcriptional targets by microarray-coupled gene-trap mutagenesis. Chen WV, et al. Nat Genet, 2004 Mar. PMID 14981515
    3. PDGF signaling specificity is mediated through multiple immediate early genes. Schmahl J, et al. Nat Genet, 2007 Jan. PMID 17143286
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within face morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within fibroblast migration IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within platelet-derived growth factor receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of fibroblast migration IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of multicellular organism growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within roof of mouth development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within skeletal system morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: zinc finger protein 431-like
    Names
    Kruppel associated box containing

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      66817010..66828867 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030247511.2 → XP_030103371.2  LOW QUALITY PROTEIN: zinc finger protein 431-like

      Conserved Domains (3) summary
      COG5048
      Location:77 → 462
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:81 → 101
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
    Nucleotide Protein Strain
    Heading Accession and Version

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