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    LOC106879249 acidic mammalian chitinase [ Octopus bimaculoides (California two-spot octopus) ]

    Gene ID: 106879249, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC106879249
    Gene description
    acidic mammalian chitinase
    Locus tag
    OCBIM_22000425mg
    See related
    EnsemblRapid:LOC106879249
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Octopus bimaculoides
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Cephalopoda; Coleoidea; Octopodiformes; Octopoda; Incirrata; Octopodidae; Octopus
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    Genomic context

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    See LOC106879249 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_01 current ASM119413v2 (GCF_001194135.2) 2 NC_068982.1 (137817538..137848443, complement)
    100 previous assembly Octopus_bimaculoides_v2_0 (GCF_001194135.1) Unplaced Scaffold NW_014696120.1 (41566..71370)

    Chromosome 2 - NC_068982.1Genomic Context describing neighboring genes Neighboring gene NEDD8 ultimate buster 1 Neighboring gene uncharacterized LOC106882527 Neighboring gene U7 snRNA-associated Sm-like protein LSm10 Neighboring gene tetratricopeptide repeat protein 19, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chitin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acidic mammalian chitinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001194135.2-RS_

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM119413v2 Primary Assembly

    Genomic

    1. NC_068982.1 Reference ASM119413v2 Primary Assembly

      Range
      137817538..137848443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052965941.1 → XP_052821901.1  acidic mammalian chitinase

      UniProtKB/TrEMBL
      A0A0L8G4R3
      Related
      XP_052821901.1, XM_052965941.1

    RNA

    1. XR_008263543.1 RNA Sequence

      Related
      XR_008263543.1
    Nucleotide Protein
    Heading Accession and Version

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