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    retrotransposon ORF-1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823582, updated on 18-Sep-2024

    Summary

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    Official Full Name
    retrotransposon ORF-1 protein
    Primary source
    TAIR:AT3G44570
    Locus tag
    AT3G44570
    See related
    Araport:AT3G44570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (16158405..16159835)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene fatty acid reductase 8 Neighboring gene uncharacterized protein Neighboring gene 60S acidic ribosomal protein family Neighboring gene cyclophilin71

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114325.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    retrotransposon ORF-1 protein
    NP_190043.4
    • Arabidopsis retrotransposon ORF-1 protein; CONTAINS InterPro DOMAIN/s: Arabidopsis retrotransposon ORF-1 protein (InterPro:IPR004312); BEST Arabidopsis thaliana protein match is: Arabidopsis retrotransposon ORF-1 protein (TAIR:AT3G30820.1); Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16158405..16159835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114325.4 → NP_190043.4  retrotransposon ORF-1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190043.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J349
      Conserved Domains (1) summary
      pfam03078
      Location:7 → 117
      ATHILA; ATHILA ORF-1 family
    Nucleotide Protein
    Heading Accession and Version

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