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    vesicle-associated protein 1-4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841550, updated on 18-Sep-2024

    Summary

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    Official Full Name
    vesicle-associated protein 1-4
    Primary source
    TAIR:AT1G51270
    Locus tag
    AT1G51270
    See related
    Araport:AT1G51270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11M15.13; F11M15_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (19007364..19011285)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene lysophosphatidyl acyltransferase 3 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084226.4
    NM_001160946.2
    NM_001333466.1
    NM_001333467.1
    NM_001333468.1
    NM_001333469.1
    NM_001333470.1
    NM_001333471.1
    NM_001333472.1
    NM_001333473.1
    NM_001333475.1
    NM_001333476.1
    NM_001333477.1
    NM_104005.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables NAD+ nucleotidase, cyclic ADP-ribose generating IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    vesicle-associated protein 1-4
    NP_001154418.1
    • structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1); Has 3496 Blast hits to 2597 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 611; Fungi - 254; Plants - 2516; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
    NP_001319192.1
    • structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1); Has 3496 Blast hits to 2596 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 611; Fungi - 254; Plants - 2515; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
    NP_001319193.1
    • structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1).
    NP_175538.3
    • structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 2812 Blast hits to 2401 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 192; Plants - 2224; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19007364..19011285
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333474.1 → NP_001321264.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WB36, A0A1P8AQE6, Q56Y44

    2. NM_001160946.2 → NP_001154418.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154418.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ET77, F4I818
      Conserved Domains (2) summary
      smart00255
      Location:357 → 492
      TIR; Toll - interleukin 1 - resistance
      pfam00635
      Location:176 → 283
      Motile_Sperm; MSP (Major sperm protein) domain

    3. NM_001333475.1 → NP_001321257.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQB2, A0A654ET77

    4. NM_001333476.1 → NP_001321265.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQB2, A0A654ET77

    5. NM_001333472.1 → NP_001319192.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ET77, F4I820

    6. NM_001084226.4 → NP_001077695.4  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077695.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ET77, F4I820
      Conserved Domains (2) summary
      smart00255
      Location:357 → 492
      TIR; Toll - interleukin 1 - resistance
      pfam00635
      Location:176 → 283
      Motile_Sperm; MSP (Major sperm protein) domain

    7. NM_104005.3 → NP_175538.3  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175538.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYC9
      UniProtKB/TrEMBL
      A0A654ET77
      Conserved Domains (2) summary
      smart00255
      Location:357 → 492
      TIR; Toll - interleukin 1 - resistance
      pfam00635
      Location:176 → 283
      Motile_Sperm; MSP (Major sperm protein) domain

    8. NM_001333477.1 → NP_001321256.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQB2, A0A654ET77

    9. NM_001333466.1 → NP_001321262.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQB2, A0A654ET77

    10. NM_001333470.1 → NP_001321259.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9E7, A0A178WB36, A0A1P8AQB3, A0A384KL39, Q56Y44

    11. NM_001333469.1 → NP_001321260.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9E7, A0A178WB36, A0A1P8AQB3, A0A384KL39, Q56Y44

    12. NM_001333467.1 → NP_001321261.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9E7, A0A178WB36, A0A1P8AQB3, A0A384KL39, Q56Y44

    13. NM_001333468.1 → NP_001321263.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9E7, A0A178WB36, A0A1P8AQB3, A0A384KL39, Q56Y44

    14. NM_001333471.1 → NP_001321258.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQC1

    15. NM_001333473.1 → NP_001319193.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I819
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYC9.1

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