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    LOC7472126 subtilisin-like protease SBT1.6 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7472126, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7472126
    Gene description
    subtilisin-like protease SBT1.6
    Locus tag
    POPTR_009G133400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7472126 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (10820452..10823176)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (10795625..10798346)

    Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene actin-depolymerizing factor 5 Neighboring gene kaempferol 3-O-beta-D-galactosyltransferase Neighboring gene protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic Neighboring gene amino acid permease 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT1.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      10820452..10823176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002313680.4 → XP_002313716.1  subtilisin-like protease SBT1.6

      See identical proteins and their annotated locations for XP_002313716.1

      UniProtKB/TrEMBL
      B9H185, B9HR73
      Conserved Domains (3) summary
      cd04852
      Location:102 → 583
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:352 → 478
      PA_subtilisin_like; PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from ...
      pfam05922
      Location:33 → 105
      Inhibitor_I9; Peptidase inhibitor I9
    Nucleotide Protein
    Heading Accession and Version

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