U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC18097766 TOM1-like protein 5 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 18097766, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC18097766
    Gene description
    TOM1-like protein 5
    Locus tag
    POPTR_004G138600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC18097766 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (16034656..16040213, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (16043683..16049254, complement)

    Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase SRK2A Neighboring gene ferrochelatase-2, chloroplastic Neighboring gene uncharacterized LOC18097767 Neighboring gene uncharacterized LOC18097769

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TOM1-like protein 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      16034656..16040213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024598676.2 → XP_024454444.2  TOM1-like protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A2K2AUC9

    2. XM_024598679.2 → XP_024454447.2  TOM1-like protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A2K2AUC9

    3. XM_024598678.2 → XP_024454446.2  TOM1-like protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A2K2AUC9

    4. XM_024598677.2 → XP_024454445.2  TOM1-like protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A2K2AUC9

    5. XM_006384326.3 → XP_006384388.3  TOM1-like protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A2K2AUC9

    6. XM_052452638.1 → XP_052308598.1  TOM1-like protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A2K2AUC9
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials