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    LOC7461830 ubiquitin-fold modifier-conjugating enzyme 1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7461830, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7461830
    Gene description
    ubiquitin-fold modifier-conjugating enzyme 1
    Locus tag
    POPTR_002G107600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7461830 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (7995272..7997125)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (7891477..7893229)

    Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene probable beta-1,4-xylosyltransferase IRX9H Neighboring gene uncharacterized LOC7467209 Neighboring gene phosphoenolpyruvate carboxykinase (ATP) Neighboring gene glutamyl-tRNA reductase 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UFM1 conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K69-linked ufmylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-fold modifier-conjugating enzyme 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      7995272..7997125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002301068.3 → XP_002301104.1  ubiquitin-fold modifier-conjugating enzyme 1

      See identical proteins and their annotated locations for XP_002301104.1

      UniProtKB/TrEMBL
      A9PCY0
      Conserved Domains (1) summary
      pfam08694
      Location:8 → 163
      UFC1; Ubiquitin-fold modifier-conjugating enzyme 1

    2. XM_052450539.1 → XP_052306499.1  ubiquitin-fold modifier-conjugating enzyme 1

      UniProtKB/TrEMBL
      A9PCY0
    Nucleotide Protein
    Heading Accession and Version

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