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    LOC7487796 probable pectinesterase/pectinesterase inhibitor 7 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7487796, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7487796
    Gene description
    probable pectinesterase/pectinesterase inhibitor 7
    Locus tag
    POPTR_002G202600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7487796 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (16680201..16682177)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (16482702..16484674)

    Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene endoglucanase 17 Neighboring gene pectinesterase Neighboring gene uncharacterized LOC7478848 Neighboring gene 60S ribosomal protein L18-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable pectinesterase/pectinesterase inhibitor 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      16680201..16682177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002302690.4 → XP_002302726.1  probable pectinesterase/pectinesterase inhibitor 7

      See identical proteins and their annotated locations for XP_002302726.1

      UniProtKB/TrEMBL
      B9GSC4
      Conserved Domains (1) summary
      PLN02713
      Location:1 → 558
      PLN02713; Probable pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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