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    TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840452, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TCP family transcription factor
    Primary source
    TAIR:AT1G35560
    Locus tag
    AT1G35560
    See related
    Araport:AT1G35560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTCP23; F15O4.35; TCP domain protein 23; TCP23
    Summary
    Encodes a member of the TCP-P subfamily that is involved in flowering time control and plant development. Mutants present an early flowering phenotype.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (13115824..13117235, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene auxin response factor 14 Neighboring gene ncRNA Neighboring gene elongation factor Tu C-terminal domain-containing protein Neighboring gene pseudo Neighboring gene cytosolic invertase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional study of TCP23 in Arabidopsis thaliana during plant development. Balsemão-Pires E, et al. Plant Physiol Biochem, 2013 Jun. PMID 23562796
    2. The N-terminal region located upstream of the TCP domain is responsible for the antagonistic action of the Arabidopsis thaliana TCP8 and TCP23 transcription factors on flowering time. Camoirano A, et al. Plant Sci, 2023 Mar. PMID 36535527
    3. Analysis of the role of Arabidopsis class I TCP genes AtTCP7, AtTCP8, AtTCP22, and AtTCP23 in leaf development. Aguilar-Martínez JA, et al. Front Plant Sci, 2013. PMID 24137171, Free PMC Article
    4. The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. Kim SH, et al. Plant J, 2014 Jun. PMID 24689742
    5. Class I TCP-DELLA interactions in inflorescence shoot apex determine plant height. Davière JM, et al. Curr Biol, 2014 Aug 18. PMID 25127215

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The N-terminal region located upstream of the TCP domain is responsible for the antagonistic action of the Arabidopsis thaliana TCP8 and TCP23 transcription factors on flowering time.
      Title: The N-terminal region located upstream of the TCP domain is responsible for the antagonistic action of the Arabidopsis thaliana TCP8 and TCP23 transcription factors on flowering time.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103253.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of timing of transition from vegetative to reproductive phase IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TCP family transcription factor
    NP_174789.1
    • TCP family transcription factor; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G72010.1); Has 382 Blast hits to 382 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 349; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      13115824..13117235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103253.2 → NP_174789.1  TCP family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174789.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LQF0
      UniProtKB/TrEMBL
      A0A5S9WM12, A0A654EKM9
      Conserved Domains (1) summary
      pfam03634
      Location:54 → 125
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQF0.1

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