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    4930522L14Rik RIKEN cDNA 4930522L14 gene [ Mus musculus (house mouse) ]

    Gene ID: 100041734, updated on 9-Dec-2024

    Summary

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    Official Symbol
    4930522L14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930522L14 geneprovided by MGI
    Primary source
    MGI:MGI:1925270
    See related
    Ensembl:ENSMUSG00000072762 Ensembl:ENSMUSG00000121595 AllianceGenome:MGI:1925270
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm42152
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 4930522L14Rik in Genome Data Viewer
    Location:
    5 F; 5 53.26 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (109845026..109899559, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (109735515..109796569, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 22 Neighboring gene vomeronasal 2, receptor, pseudogene 23 Neighboring gene STARR-seq mESC enhancer starr_13919 Neighboring gene zinc finger protein 1007 Neighboring gene STARR-positive B cell enhancer ABC_E9649 Neighboring gene STARR-seq mESC enhancer starr_13923 Neighboring gene STARR-seq mESC enhancer starr_13924 Neighboring gene golgin subfamily A member 7 pseudogene Neighboring gene STARR-seq mESC enhancer starr_13926 Neighboring gene zinc finger protein pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100041734

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378567.1 → NP_001365496.1  uncharacterized protein LOC100041734 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC162689
      UniProtKB/TrEMBL
      E9QAG4
      Related
      ENSMUSP00000108166.2, ENSMUST00000112547.9

    2. NM_001378568.1 → NP_001365497.1  uncharacterized protein LOC100041734 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC162689

    3. NM_001378570.1 → NP_001365499.1  uncharacterized protein LOC100041734 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC116718, AC162689
      Related
      ENSMUST00000249386.1

    4. NM_001378581.1 → NP_001365510.1  uncharacterized protein LOC100041734 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC162689, AK019690
      UniProtKB/TrEMBL
      Q8BJ78, Q8C1G8
      Related
      ENSMUSP00000098497.4, ENSMUST00000100937.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      109845026..109899559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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