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    ATAD1 ATPase family AAA domain containing 1 [ Cygnus atratus (black swan) ]

    Gene ID: 118249063, updated on 20-Mar-2024

    Summary

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    Gene symbol
    ATAD1
    Gene description
    ATPase family AAA domain containing 1
    See related
    EnsemblRapid:ENSACYG00000001530
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus atratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
    Orthologs
    human mouse all
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    Genomic context

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    See ATAD1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 7 NC_066368.1 (21847870..21877564)
    100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336586.1 (35594210..35623654, complement)

    Chromosome 7 - NC_066368.1Genomic Context describing neighboring genes Neighboring gene lipase member K-like Neighboring gene renalase, FAD dependent amine oxidase Neighboring gene phosphatase and tensin homolog Neighboring gene uncharacterized LOC118249268 Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 2 Neighboring gene uncharacterized LOC118243856 Neighboring gene multiple inositol-polyphosphate phosphatase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    outer mitochondrial transmembrane helix translocase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Genomic

    1. NC_066368.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

      Range
      21847870..21877564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_050711843.1 → XP_050567800.1  outer mitochondrial transmembrane helix translocase isoform X2

    2. XM_035548947.2 → XP_035404840.1  outer mitochondrial transmembrane helix translocase isoform X2

      Conserved Domains (2) summary
      pfam17862
      Location:282 → 322
      AAA_lid_3; AAA+ lid domain
      cd19520
      Location:92 → 257
      RecA-like_ATAD1; ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains

    3. XM_035548785.2 → XP_035404678.1  outer mitochondrial transmembrane helix translocase isoform X2

      Related
      ENSACYP00000002458.1
      Conserved Domains (2) summary
      pfam17862
      Location:282 → 322
      AAA_lid_3; AAA+ lid domain
      cd19520
      Location:92 → 257
      RecA-like_ATAD1; ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains

    4. XM_035548867.2 → XP_035404760.1  outer mitochondrial transmembrane helix translocase isoform X2

      Conserved Domains (2) summary
      pfam17862
      Location:282 → 322
      AAA_lid_3; AAA+ lid domain
      cd19520
      Location:92 → 257
      RecA-like_ATAD1; ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains

    5. XM_035548703.2 → XP_035404596.1  outer mitochondrial transmembrane helix translocase isoform X1

      Related
      ENSACYP00000002465.1
      Conserved Domains (2) summary
      pfam17862
      Location:292 → 332
      AAA_lid_3; AAA+ lid domain
      cd19520
      Location:102 → 267
      RecA-like_ATAD1; ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains
    Nucleotide Protein
    Heading Accession and Version

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