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    LOC8278615 gibberellin 3-beta-dioxygenase 1 [ Ricinus communis (castor bean) ]

    Gene ID: 8278615, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8278615
    Gene description
    gibberellin 3-beta-dioxygenase 1
    Locus tag
    RCOM_0927560
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8278615 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 3 NC_063258.1 (31417975..31419901)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994295.1 (1597206..1599124, complement)

    Chromosome 3 - NC_063258.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene protein TIFY 8 Neighboring gene coiled-coil domain-containing protein 93 Neighboring gene probable 2-oxoglutarate-dependent dioxygenase AOP1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables gibberellin 3-beta-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gibberellin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gibberellin 3-beta-dioxygenase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063258.1 Reference ASM1957865v1

      Range
      31417975..31419901
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002515553.3 → XP_002515599.1  gibberellin 3-beta-dioxygenase 1

      See identical proteins and their annotated locations for XP_002515599.1

      UniProtKB/TrEMBL
      B9RPD0
      Conserved Domains (3) summary
      PLN02254
      Location:2 → 345
      PLN02254; gibberellin 3-beta-dioxygenase
      pfam03171
      Location:205 → 299
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
      pfam14226
      Location:50 → 151
      DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
    Nucleotide Protein
    Heading Accession and Version

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