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    DEG6 DegP protease 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841538, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DEG6
    Official Full Name
    DegP protease 6
    Primary source
    TAIR:AT1G51150
    Locus tag
    AT1G51150
    See related
    Araport:AT1G51150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DegP protease 6; DegP6; degradation of periplasmic proteins 6; F11M15.1
    Summary
    Encodes a putative DegP protease.
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    Genomic context

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    See DEG6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (18948370..18949290, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nse4, component of Smc5/6 DNA repair complex Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene SNARE-like superfamily protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    DegP protease 6
    NP_175527.2
    • DegP protease 6 (DegP6); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254); BEST Arabidopsis thaliana protein match is: Trypsin family protein (TAIR:AT5G54745.1); Has 545 Blast hits to 544 proteins in 132 species: Archae - 6; Bacteria - 188; Metazoa - 9; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18948370..18949290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103994.2 → NP_175527.2  DegP protease 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175527.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I802, Q9C691, Q9SYB7
      UniProtKB/TrEMBL
      A0A178WIW4
      Conserved Domains (1) summary
      pfam13365
      Location:85 → 201
      Trypsin_2; Trypsin-like peptidase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C691.2

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