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    LOC100506446 uncharacterized LOC100506446 [ Homo sapiens (human) ]

    Gene ID: 100506446, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100506446
    Gene description
    uncharacterized LOC100506446
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100506446 in Genome Data Viewer
    Location:
    14q21.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (49919861..49963032, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (44125047..44168219, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5711 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8328 Neighboring gene ARF GTPase 6 Neighboring gene RNA, U6 small nuclear 189, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:50384275-50384775 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:50390203-50390704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8329 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:50398632-50399133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5713 Neighboring gene Sharpr-MPRA regulatory region 12300 Neighboring gene uncharacterized LOC105370485 Neighboring gene microRNA 6076 Neighboring gene Sharpr-MPRA regulatory region 3168 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8333 Neighboring gene long intergenic non-protein coding RNA 1588

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      49919861..49963032 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007064156.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      44125047..44168219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007084697.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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