U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC105378598 uncharacterized LOC105378598 [ Homo sapiens (human) ]

    Gene ID: 105378598, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105378598
    Gene description
    uncharacterized LOC105378598
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 2.2), lung (RPKM 0.3) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105378598 in Genome Data Viewer
    Location:
    1p36.32
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (2767828..2784745)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (2270847..2284476)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 34 Neighboring gene uncharacterized LOC112268220 Neighboring gene uncharacterized LOC107985732 Neighboring gene uncharacterized LOC105378600 Neighboring gene uncharacterized LOC107984904 Neighboring gene uncharacterized LOC105378599 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2706849-2707508 Neighboring gene uncharacterized LOC124903826 Neighboring gene uncharacterized LOC124903825 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2766741-2767242 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:2824551-2825750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2837727-2838286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 57 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2931349-2932112 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6546 Neighboring gene actin related protein T2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      2767828..2784745
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007065371.1 RNA Sequence

    2. XR_007065370.1 RNA Sequence

    3. XR_007065372.1 RNA Sequence

    4. XR_007065367.1 RNA Sequence

    5. XR_007065363.1 RNA Sequence

    6. XR_007065364.1 RNA Sequence

    7. XR_007065380.1 RNA Sequence

    8. XR_007065379.1 RNA Sequence

    9. XR_007065378.1 RNA Sequence

    10. XR_007065377.1 RNA Sequence

    11. XR_007065368.1 RNA Sequence

    12. XR_007065366.1 RNA Sequence

    13. XR_946844.1 RNA Sequence

    14. XR_946846.1 RNA Sequence

    15. XR_007065365.1 RNA Sequence

    16. XR_007065376.1 RNA Sequence

    17. XR_007065375.1 RNA Sequence

    18. XR_007065374.1 RNA Sequence

    19. XR_007065369.1 RNA Sequence

    20. XR_007065373.1 RNA Sequence

    21. XR_946858.1 RNA Sequence

    22. XR_946859.1 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187515.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      331002..341941
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007068590.1 RNA Sequence

    2. XR_007068589.1 RNA Sequence

    3. XR_007068586.1 RNA Sequence

    4. XR_007068582.1 RNA Sequence

    5. XR_007068583.1 RNA Sequence

    6. XR_007068598.1 RNA Sequence

    7. XR_007068597.1 RNA Sequence

    8. XR_007068596.1 RNA Sequence

    9. XR_007068595.1 RNA Sequence

    10. XR_007068587.1 RNA Sequence

    11. XR_007068585.1 RNA Sequence

    12. XR_951576.1 RNA Sequence

    13. XR_951577.1 RNA Sequence

    14. XR_007068584.1 RNA Sequence

    15. XR_007068594.1 RNA Sequence

    16. XR_007068593.1 RNA Sequence

    17. XR_007068592.1 RNA Sequence

    18. XR_007068588.1 RNA Sequence

    19. XR_007068591.1 RNA Sequence

    20. XR_951590.1 RNA Sequence

    21. XR_951593.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      2270847..2284476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007069762.1 RNA Sequence

    2. XR_007069761.1 RNA Sequence

    3. XR_007069763.1 RNA Sequence

    4. XR_007069756.1 RNA Sequence

    5. XR_007069759.1 RNA Sequence

    6. XR_007069753.1 RNA Sequence

    7. XR_007069754.1 RNA Sequence

    8. XR_007069767.1 RNA Sequence

    9. XR_007069768.1 RNA Sequence

    10. XR_007069766.1 RNA Sequence

    11. XR_007069765.1 RNA Sequence

    12. XR_007069760.1 RNA Sequence

    13. XR_007069758.1 RNA Sequence

    14. XR_007069757.1 RNA Sequence

    15. XR_007069755.1 RNA Sequence

    16. XR_007069764.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials