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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly
Genomic
-
NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly
- Range
-
41452538..41498064
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_040695999.2 → XP_040551933.2 LOW QUALITY PROTEIN: collagen alpha-6(VI) chain isoform X1
- UniProtKB/TrEMBL
-
A0A8V0Z6E9
- Related
- ENSGALP00010026505.1, ENSGALT00010044525.1
Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w
Genomic
-
NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w
- Range
-
41506285..41557509
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_046911985.1 → XP_046767941.1 collagen alpha-6(VI) chain isoform X5
-
XM_040662833.2 → XP_040518767.1 collagen alpha-6(VI) chain isoform X6
- Conserved Domains (6) summary
-
- smart00131
Location:2486 → 2538
- KU; BPTI/Kunitz family of serine protease inhibitors
- smart00327
Location:1387 → 1570
- VWA; von Willebrand factor (vWF) type A domain
- PHA03169
Location:1636 → 1826
- PHA03169; hypothetical protein; Provisional
- cd01450
Location:1003 → 1158
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01472
Location:32 → 197
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- cl00057
Location:428 → 594
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
-
XM_046911986.1 → XP_046767942.1 collagen alpha-6(VI) chain isoform X5
-
XM_040662832.2 → XP_040518766.1 collagen alpha-6(VI) chain isoform X5
- Conserved Domains (6) summary
-
- smart00131
Location:2487 → 2539
- KU; BPTI/Kunitz family of serine protease inhibitors
- smart00327
Location:1388 → 1571
- VWA; von Willebrand factor (vWF) type A domain
- PHA03169
Location:1637 → 1827
- PHA03169; hypothetical protein; Provisional
- cd01450
Location:1004 → 1159
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01472
Location:33 → 198
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- cl00057
Location:429 → 595
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
-
XM_040662831.2 → XP_040518765.1 collagen alpha-6(VI) chain isoform X4
- Conserved Domains (6) summary
-
- smart00131
Location:2502 → 2554
- KU; BPTI/Kunitz family of serine protease inhibitors
- smart00327
Location:1404 → 1587
- VWA; von Willebrand factor (vWF) type A domain
- PHA03169
Location:1653 → 1843
- PHA03169; hypothetical protein; Provisional
- cd01450
Location:1020 → 1175
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01472
Location:49 → 214
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- cl00057
Location:445 → 611
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
-
XM_040662829.2 → XP_040518763.1 collagen alpha-6(VI) chain isoform X2
- Conserved Domains (6) summary
-
- smart00131
Location:2503 → 2555
- KU; BPTI/Kunitz family of serine protease inhibitors
- smart00327
Location:1404 → 1587
- VWA; von Willebrand factor (vWF) type A domain
- PHA03169
Location:1653 → 1843
- PHA03169; hypothetical protein; Provisional
- cd01450
Location:1020 → 1175
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01472
Location:49 → 214
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- cl00057
Location:445 → 611
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
-
XM_040662830.2 → XP_040518764.1 collagen alpha-6(VI) chain isoform X3
- Conserved Domains (6) summary
-
- smart00131
Location:2502 → 2554
- KU; BPTI/Kunitz family of serine protease inhibitors
- smart00327
Location:1403 → 1586
- VWA; von Willebrand factor (vWF) type A domain
- PHA03169
Location:1652 → 1842
- PHA03169; hypothetical protein; Provisional
- cd01450
Location:1019 → 1174
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01472
Location:48 → 213
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- cl00057
Location:444 → 610
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
RNA
-
XR_005846094.1 RNA Sequence