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    COL6A6 collagen type VI alpha 6 chain [ Gallus gallus (chicken) ]

    Gene ID: 428448, updated on 3-Dec-2024

    Summary

    Official Symbol
    COL6A6provided by CGNC
    Official Full Name
    collagen type VI alpha 6 chainprovided by CGNC
    Primary source
    CGNC:53367
    See related
    Ensembl:ENSGALG00010018426
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
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    Genomic context

    See COL6A6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (41452538..41498064)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (41506285..41557509)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene SH3 domain binding protein 5 Neighboring gene calpain 7 Neighboring gene uncharacterized LOC121112226 Neighboring gene phosphoinositide-3-kinase regulatory subunit 4

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    collagen alpha-6(VI) chain; LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
    Names
    collagen, type VI, alpha 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      41452538..41498064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040695999.2XP_040551933.2  LOW QUALITY PROTEIN: collagen alpha-6(VI) chain isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z6E9
      Related
      ENSGALP00010026505.1, ENSGALT00010044525.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      41506285..41557509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046911985.1XP_046767941.1  collagen alpha-6(VI) chain isoform X5

    2. XM_040662833.2XP_040518767.1  collagen alpha-6(VI) chain isoform X6

      Conserved Domains (6) summary
      smart00131
      Location:24862538
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00327
      Location:13871570
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:16361826
      PHA03169; hypothetical protein; Provisional
      cd01450
      Location:10031158
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:32197
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:428594
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    3. XM_046911986.1XP_046767942.1  collagen alpha-6(VI) chain isoform X5

    4. XM_040662832.2XP_040518766.1  collagen alpha-6(VI) chain isoform X5

      Conserved Domains (6) summary
      smart00131
      Location:24872539
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00327
      Location:13881571
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:16371827
      PHA03169; hypothetical protein; Provisional
      cd01450
      Location:10041159
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:33198
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:429595
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    5. XM_040662831.2XP_040518765.1  collagen alpha-6(VI) chain isoform X4

      Conserved Domains (6) summary
      smart00131
      Location:25022554
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00327
      Location:14041587
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:16531843
      PHA03169; hypothetical protein; Provisional
      cd01450
      Location:10201175
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:49214
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:445611
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    6. XM_040662829.2XP_040518763.1  collagen alpha-6(VI) chain isoform X2

      Conserved Domains (6) summary
      smart00131
      Location:25032555
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00327
      Location:14041587
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:16531843
      PHA03169; hypothetical protein; Provisional
      cd01450
      Location:10201175
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:49214
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:445611
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    7. XM_040662830.2XP_040518764.1  collagen alpha-6(VI) chain isoform X3

      Conserved Domains (6) summary
      smart00131
      Location:25022554
      KU; BPTI/Kunitz family of serine protease inhibitors
      smart00327
      Location:14031586
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:16521842
      PHA03169; hypothetical protein; Provisional
      cd01450
      Location:10191174
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:48213
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:444610
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    RNA

    1. XR_005846094.1 RNA Sequence