U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC101751678 trichohyalin-like [ Gallus gallus (chicken) ]

    Gene ID: 101751678, updated on 3-Dec-2024

    Summary

    Symbol
    LOC101751678provided by CGNC
    Full Name
    trichohyalin-likeprovided by CGNC
    Primary source
    CGNC:71097
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SCFN
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC101751678 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (1279353..1291371, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (1280751..1292669, complement)

    Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene nicastrin Neighboring gene coatomer protein complex subunit alpha Neighboring gene S100 calcium binding protein A11 Neighboring gene uncharacterized LOC121107559 Neighboring gene keratin-associated protein 10-4-like Neighboring gene cornulin

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    trichohyalin
    Names
    scaffoldin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001351495.3NP_001338424.3  trichohyalin

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000349
      UniProtKB/TrEMBL
      A0A8V1AA76
      Conserved Domains (4) summary
      PTZ00121
      Location:3651062
      PTZ00121; MAEBL; Provisional
      PRK10811
      Location:15611955
      rne; ribonuclease E; Reviewed
      PRK12678
      Location:15161675
      PRK12678; transcription termination factor Rho; Provisional
      cd00213
      Location:586
      S-100; S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1279353..1291371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046903885.1XP_046759841.1  trichohyalin isoform X15

      UniProtKB/TrEMBL
      A0A8V1AA76
    2. XM_046903872.1XP_046759828.1  trichohyalin isoform X2

      UniProtKB/TrEMBL
      A0A8V1AA76
    3. XM_046903880.1XP_046759836.1  trichohyalin isoform X10

      UniProtKB/TrEMBL
      A0A8V1AA76
    4. XM_046903882.1XP_046759838.1  trichohyalin isoform X12

      UniProtKB/TrEMBL
      A0A8V1AA76
    5. XM_046903875.1XP_046759831.1  trichohyalin isoform X5

      UniProtKB/TrEMBL
      A0A8V1AA76
    6. XM_046903889.1XP_046759845.1  trichohyalin isoform X19

      UniProtKB/TrEMBL
      A0A8V1AFL2
    7. XM_046903888.1XP_046759844.1  trichohyalin isoform X18

      UniProtKB/TrEMBL
      A0A8V1AFL2
    8. XM_046903886.1XP_046759842.1  trichohyalin isoform X16

      UniProtKB/TrEMBL
      A0A8V1AFL2
    9. XM_046903884.1XP_046759840.1  trichohyalin isoform X14

      UniProtKB/TrEMBL
      A0A8V1AA76
    10. XM_046903883.1XP_046759839.1  trichohyalin isoform X13

      UniProtKB/TrEMBL
      A0A8V1AA76
    11. XM_046903876.1XP_046759832.1  trichohyalin isoform X6

      UniProtKB/TrEMBL
      A0A8V1AA76
    12. XM_046903890.1XP_046759846.1  trichohyalin isoform X20

      UniProtKB/TrEMBL
      A0A8V1AFL2
    13. XM_046903887.1XP_046759843.1  trichohyalin isoform X17

      UniProtKB/TrEMBL
      A0A8V1AFL2
    14. XM_046903879.1XP_046759835.1  trichohyalin isoform X9

      UniProtKB/TrEMBL
      A0A8V1AA76
    15. XM_046903881.1XP_046759837.1  trichohyalin isoform X11

      UniProtKB/TrEMBL
      A0A8V1AA76
    16. XM_046903878.1XP_046759834.1  trichohyalin isoform X8

      UniProtKB/TrEMBL
      A0A8V1AA76
    17. XM_046903874.1XP_046759830.1  trichohyalin isoform X4

      UniProtKB/TrEMBL
      A0A8V1AA76
    18. XM_046903877.1XP_046759833.1  trichohyalin isoform X7

      UniProtKB/TrEMBL
      A0A8V1AA76
    19. XM_046903873.1XP_046759829.1  trichohyalin isoform X3

      UniProtKB/TrEMBL
      A0A8V1AA76
    20. XM_046903871.1XP_046759827.1  trichohyalin isoform X1

      UniProtKB/TrEMBL
      A0A8V1AA76

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1280751..1292669 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)