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    IQD19 IQ-domain 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827130, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD19
    Official Full Name
    IQ-domain 19
    Primary source
    TAIR:AT4G14750
    Locus tag
    AT4G14750
    See related
    Araport:AT4G14750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3415W; FCAALL.303; IQ-domain 19
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    Genomic context

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    See IQD19 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (8470179..8472217)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene neurogenic locus notch-like protein Neighboring gene ncRNA Neighboring gene kinase interacting (KIP1-like) family protein Neighboring gene TESMIN/TSO1-like CXC 2 Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic control of trichome branch number in Arabidopsis: the roles of the FURCA loci. Luo D, et al. Development, 1999 Dec. PMID 10572032
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_117560.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in trichome branching IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    IQ-domain 19
    NP_193211.2
    • IQ-domain 19 (IQD19); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 2338 Blast hits to 1945 proteins in 201 species: Archae - 4; Bacteria - 168; Metazoa - 612; Fungi - 134; Plants - 1079; Viruses - 66; Other Eukaryotes - 275 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8470179..8472217
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340965.1 → NP_001328646.1  IQ-domain 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8B590, O23331, Q8RXR4
      UniProtKB/TrEMBL
      A0A178V3R5
      Conserved Domains (3) summary
      pfam00612
      Location:166 → 184
      IQ; IQ calmodulin-binding motif
      pfam13178
      Location:300 → 386
      DUF4005; Protein of unknown function (DUF4005)
      cd22307
      Location:140 → 185
      Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif

    2. NM_001340966.1 → NP_001328647.1  IQ-domain 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3R5, A0A1P8B5B0

    3. NM_117560.3 → NP_193211.2  IQ-domain 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193211.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3R5, A0A5S9XSE5, F4JIF3
      Conserved Domains (3) summary
      pfam00612
      Location:107 → 125
      IQ; IQ calmodulin-binding motif
      pfam13178
      Location:241 → 327
      DUF4005; Protein of unknown function (DUF4005)
      cd22307
      Location:81 → 126
      Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1P8B590.1

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