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    Glycine cleavage T-protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837733, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycine cleavage T-protein family
    Primary source
    TAIR:AT1G11860
    Locus tag
    AT1G11860
    See related
    Araport:AT1G11860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12F1.30; F12F1_30
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (4001113..4003748)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein Neighboring gene uncharacterized protein Neighboring gene Seryl-tRNA synthetase Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. T-protein is present in large excess over the other proteins of the glycine cleavage system in leaves of Arabidopsis. Timm S, et al. Planta, 2018 Jan. PMID 28866761
    2. Identification and molecular properties of SUMO-binding proteins in Arabidopsis. Park HC, et al. Mol Cells, 2011 Aug. PMID 21607647, Free PMC Article
    3. Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism. Lee CP, et al. Mol Cell Proteomics, 2008 Jul. PMID 18385124
    4. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    5. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332004.1
    NM_101057.5
    NM_179315.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables aminomethyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Glycine cleavage T-protein family
    NP_001318983.1
    • Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3).
    NP_172650.1
    • Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3); Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139; Bacteria - 5685; Metazoa - 432; Fungi - 162; Plants - 109; Viruses - 0; Other Eukaryotes - 11997 (source: NCBI BLink).
    NP_849646.1
    • Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3); Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139; Bacteria - 5685; Metazoa - 432; Fungi - 162; Plants - 109; Viruses - 0; Other Eukaryotes - 11997 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4001113..4003748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332004.1 → NP_001318983.1  Glycine cleavage T-protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZEA9

    2. NM_101057.5 → NP_172650.1  Glycine cleavage T-protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172650.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65396, Q42123
      UniProtKB/TrEMBL
      A0A178WFZ3, A0A5S9TXN5
      Conserved Domains (1) summary
      PLN02319
      Location:6 → 408
      PLN02319; aminomethyltransferase

    3. NM_179315.1 → NP_849646.1  Glycine cleavage T-protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849646.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65396, Q42123
      UniProtKB/TrEMBL
      A0A178WFZ3, A0A5S9TXN5
      Conserved Domains (1) summary
      PLN02319
      Location:6 → 408
      PLN02319; aminomethyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65396.1

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