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    PRDM1 PR/SET domain 1 [ Mauremys mutica (yellowpond turtle) ]

    Gene ID: 123367693, updated on 22-Mar-2024

    Summary

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    Gene symbol
    PRDM1
    Gene description
    PR/SET domain 1
    Locus tag
    KIL84_016940
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys mutica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See PRDM1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current ASM2049712v1 (GCF_020497125.1) 3 NC_059074.1 (81490711..81618704)

    Chromosome 3 - NC_059074.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123366650 Neighboring gene uncharacterized LOC123366212 Neighboring gene autophagy related 5 Neighboring gene crystallin beta-gamma domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_059074.1 Chromosome 3 Reference ASM2049712v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone deacetylase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PR domain zinc finger protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2049712v1 Primary Assembly

    Genomic

    1. NC_059074.1 Reference ASM2049712v1 Primary Assembly

      Range
      81490711..81618704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045012105.1 → XP_044868040.1  PR domain zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A9D4AY57
      Conserved Domains (3) summary
      COG5048
      Location:351 → 641
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:530 → 550
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19187
      Location:45 → 172
      PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

    2. XM_045012107.1 → XP_044868042.1  PR domain zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A9D4AY57
      Conserved Domains (3) summary
      COG5048
      Location:351 → 641
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:530 → 550
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19187
      Location:45 → 172
      PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

    3. XM_045012102.1 → XP_044868037.1  PR domain zinc finger protein 1 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:396 → 671
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:560 → 580
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19187
      Location:75 → 202
      PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

    4. XM_045012103.1 → XP_044868038.1  PR domain zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A9D4AY57
      Conserved Domains (3) summary
      COG5048
      Location:351 → 641
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:530 → 550
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19187
      Location:45 → 172
      PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

    5. XM_045012104.1 → XP_044868039.1  PR domain zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A9D4AY57
      Conserved Domains (3) summary
      COG5048
      Location:351 → 641
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:530 → 550
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19187
      Location:45 → 172
      PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

    6. XM_045012106.1 → XP_044868041.1  PR domain zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A9D4AY57
      Conserved Domains (3) summary
      COG5048
      Location:351 → 641
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:530 → 550
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19187
      Location:45 → 172
      PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

    7. XM_045012108.1 → XP_044868043.1  PR domain zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A9D4AY57
      Conserved Domains (3) summary
      COG5048
      Location:351 → 641
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:530 → 550
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19187
      Location:45 → 172
      PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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