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    LOC122971729 alpha-tectorin-like [ Thunnus albacares (yellowfin tuna) ]

    Gene ID: 122971729, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC122971729
    Gene description
    alpha-tectorin-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thunnus albacares
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
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    Genomic context

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    See LOC122971729 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current fThuAlb1.1 (GCF_914725855.1) 20 NC_058125.1 (13204162..13217393)

    Chromosome 20 - NC_058125.1Genomic Context describing neighboring genes Neighboring gene neurexophilin-1-like Neighboring gene alpha-tectorin-like Neighboring gene IgGFc-binding protein-like Neighboring gene IgGFc-binding protein-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058125.1 Chromosome 20 Reference fThuAlb1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: alpha-tectorin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fThuAlb1.1

    Genomic

    1. NC_058125.1 Reference fThuAlb1.1

      Range
      13204162..13217393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044338472.1 → XP_044194407.1  LOW QUALITY PROTEIN: alpha-tectorin-like

      Conserved Domains (5) summary
      smart00216
      Location:1060 → 1223
      VWD; von Willebrand factor (vWF) type D domain
      smart00539
      Location:94 → 233
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      smart00832
      Location:501 → 568
      C8; This domain contains 8 conserved cysteine residues
      cl17735
      Location:1391 → 1444
      VWC; von Willebrand factor type C domain
      cl27758
      Location:1763 → 2002
      Zona_pellucida; Zona pellucida-like domain
    Nucleotide Protein
    Heading Accession and Version

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