U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    HLF HLF transcription factor, PAR bZIP family member [ Cervus elaphus (red deer) ]

    Gene ID: 122694243, updated on 22-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    HLF
    Gene description
    HLF transcription factor, PAR bZIP family member
    See related
    EnsemblRapid:ENSCESG00005006861
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cervus elaphus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HLF in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current mCerEla1.1 (GCF_910594005.1) 5 NC_057819.1 (78637507..78692318)

    Chromosome 5 - NC_057819.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene syntaxin binding protein 4 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L12-like Neighboring gene uncharacterized LOC122694245

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_057819.1 Chromosome 5 Reference mCerEla1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    hepatic leukemia factor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cervus elaphus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCerEla1.1

    Genomic

    1. NC_057819.1 Reference mCerEla1.1

      Range
      78637507..78692318
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043902718.1 → XP_043758653.1  hepatic leukemia factor isoform X1

      Related
      ENSCESP00005009066.1, ENSCEST00005010739.1
      Conserved Domains (2) summary
      cd14695
      Location:224 → 283
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
      cl26730
      Location:98 → 157
      Amelin; Ameloblastin precursor (Amelin)

    2. XM_043902719.1 → XP_043758654.1  hepatic leukemia factor isoform X2

      Conserved Domains (2) summary
      cd14695
      Location:139 → 198
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
      cl26730
      Location:13 → 72
      Amelin; Ameloblastin precursor (Amelin)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.