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    SHPRH SNF2 histone linker PHD RING helicase [ Lagopus leucura (white-tailed ptarmigan) ]

    Gene ID: 122185550, updated on 22-Mar-2024

    Summary

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    Gene symbol
    SHPRH
    Gene description
    SNF2 histone linker PHD RING helicase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagopus leucura
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
    Orthologs
    human mouse all
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    Genomic context

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    See SHPRH in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    100 current USGS_WTPT01 (GCF_019238085.1) Unplaced Scaffold NW_024962252.1 (57239931..57286060)

    NW_024962252.1Genomic Context describing neighboring genes Neighboring gene RAB32, member RAS oncogene family Neighboring gene glutamate metabotropic receptor 1 Neighboring gene uncharacterized LOC122187959 Neighboring gene uncharacterized LOC122187954 Neighboring gene F-box protein 30

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024962252 Unplaced Scaffold Reference USGS_WTPT01

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SHPRH

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagopus leucura Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USGS_WTPT01

    Genomic

    1. NW_024962252.1 Reference USGS_WTPT01

      Range
      57239931..57286060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042881465.1 → XP_042737399.1  E3 ubiquitin-protein ligase SHPRH isoform X2

      Conserved Domains (7) summary
      COG5574
      Location:1240 → 1496
      PEX10; RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cd00073
      Location:440 → 522
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      cd15547
      Location:670 → 716
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      cd16569
      Location:1438 → 1488
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cd18793
      Location:1517 → 1634
      SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
      cd18070
      Location:712 → 913
      DEXQc_SHPRH; DEXQ-box helicase domain of SHPRH
      cl28899
      Location:307 → 410
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    2. XM_042881445.1 → XP_042737379.1  E3 ubiquitin-protein ligase SHPRH isoform X1

      Conserved Domains (7) summary
      COG5574
      Location:1240 → 1496
      PEX10; RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cd00073
      Location:440 → 522
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      cd15547
      Location:670 → 716
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      cd16569
      Location:1438 → 1488
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cd18793
      Location:1517 → 1642
      SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
      cd18070
      Location:712 → 913
      DEXQc_SHPRH; DEXQ-box helicase domain of SHPRH
      cl28899
      Location:307 → 410
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    3. XM_042881456.1 → XP_042737390.1  E3 ubiquitin-protein ligase SHPRH isoform X1

      Conserved Domains (7) summary
      COG5574
      Location:1240 → 1496
      PEX10; RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cd00073
      Location:440 → 522
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      cd15547
      Location:670 → 716
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      cd16569
      Location:1438 → 1488
      RING-HC_SHPRH; RING finger, HC subclass, found in SNF2 histone-linker PHD finger RING finger helicase (SHPRH) and similar proteins
      cd18793
      Location:1517 → 1642
      SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
      cd18070
      Location:712 → 913
      DEXQc_SHPRH; DEXQ-box helicase domain of SHPRH
      cl28899
      Location:307 → 410
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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