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    LOC109102939 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like [ Cyprinus carpio (common carp) ]

    Gene ID: 109102939, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC109102939
    Gene description
    arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like
    See related
    Ensembl:ENSCCRG00000014017
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinus carpio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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    Genomic context

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    See LOC109102939 in Genome Data Viewer
    Location:
    chromosome: A17
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    101 current ASM1834038v1 (GCF_018340385.1) A17 NC_056588.1 (16478533..16538085)
    100 previous assembly common carp genome (GCF_000951615.1) 28 NC_031724.1 (21624787..21688003, complement)

    Chromosome A17 - NC_056588.1Genomic Context describing neighboring genes Neighboring gene lysophospholipid acyltransferase 2-like Neighboring gene uncharacterized LOC122148181 Neighboring gene integrin beta-1-binding protein 1-like Neighboring gene ADAM metallopeptidase domain 17a Neighboring gene isoamyl acetate hydrolyzing esterase 1 (putative)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834038v1 Primary Assembly

    Genomic

    1. NC_056588.1 Reference ASM1834038v1 Primary Assembly

      Range
      16478533..16538085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042774248.1 → XP_042630182.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X4

      UniProtKB/TrEMBL
      A0A8C1B089, A0A9Q9Z1B6
      Conserved Domains (6) summary
      cd07642
      Location:34 → 257
      BAR_ASAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2
      COG0666
      Location:562 → 692
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:309 → 415
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:597 → 630
      ANK; ANK repeat [structural motif]
      cl28907
      Location:431 → 553
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl17036
      Location:933 → 988
      SH3; Src Homology 3 domain superfamily

    2. XM_042774244.1 → XP_042630178.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A8C1B089, A0A9Q9Z199
      Conserved Domains (6) summary
      cd07642
      Location:34 → 257
      BAR_ASAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2
      COG0666
      Location:562 → 692
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:309 → 415
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:597 → 630
      ANK; ANK repeat [structural motif]
      cl28907
      Location:431 → 553
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl17036
      Location:942 → 997
      SH3; Src Homology 3 domain superfamily

    3. XM_042774245.1 → XP_042630179.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X2

      UniProtKB/TrEMBL
      A0A9J7YJA6, A0A9Q9Z190
      Conserved Domains (6) summary
      cd07642
      Location:34 → 257
      BAR_ASAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2
      COG0666
      Location:559 → 689
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:306 → 412
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:594 → 627
      ANK; ANK repeat [structural motif]
      cl28907
      Location:428 → 550
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl17036
      Location:939 → 994
      SH3; Src Homology 3 domain superfamily

    4. XM_042774254.1 → XP_042630188.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X8

      UniProtKB/TrEMBL
      A0A8C1IED1, A0A9R0BCK0
      Conserved Domains (6) summary
      cd07642
      Location:34 → 248
      BAR_ASAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2
      COG0666
      Location:553 → 683
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:300 → 406
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:588 → 621
      ANK; ANK repeat [structural motif]
      cl28907
      Location:422 → 544
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl17036
      Location:924 → 979
      SH3; Src Homology 3 domain superfamily

    5. XM_042774247.1 → XP_042630181.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X3

      UniProtKB/TrEMBL
      A0A8C1IED1, A0A9Q9Z193
      Conserved Domains (6) summary
      cd07642
      Location:34 → 248
      BAR_ASAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2
      COG0666
      Location:553 → 683
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:300 → 406
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:588 → 621
      ANK; ANK repeat [structural motif]
      cl28907
      Location:422 → 544
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl17036
      Location:933 → 988
      SH3; Src Homology 3 domain superfamily

    6. XM_042774249.1 → XP_042630183.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X5

      UniProtKB/TrEMBL
      A0A8C1IED1, A0A9Q9Z191
      Conserved Domains (6) summary
      cd07642
      Location:34 → 248
      BAR_ASAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2
      COG0666
      Location:550 → 680
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:297 → 403
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:585 → 618
      ANK; ANK repeat [structural motif]
      cl28907
      Location:419 → 541
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl17036
      Location:930 → 985
      SH3; Src Homology 3 domain superfamily

    7. XM_042774250.1 → XP_042630184.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X6

      UniProtKB/TrEMBL
      A0A8C1B2C0, A0A9Q9Z192
      Conserved Domains (6) summary
      cd07642
      Location:3 → 222
      BAR_ASAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2
      COG0666
      Location:527 → 657
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:274 → 380
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:562 → 595
      ANK; ANK repeat [structural motif]
      cl28907
      Location:396 → 518
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl17036
      Location:907 → 962
      SH3; Src Homology 3 domain superfamily

    8. XM_042774251.1 → XP_042630185.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X7

      UniProtKB/TrEMBL
      A0A9J7ZG99, A0A9Q9Z2G6
      Conserved Domains (6) summary
      COG0666
      Location:509 → 639
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:256 → 362
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:544 → 577
      ANK; ANK repeat [structural motif]
      cl28907
      Location:378 → 500
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl12013
      Location:1 → 204
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:889 → 944
      SH3; Src Homology 3 domain superfamily

    9. XM_042774253.1 → XP_042630187.1  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X7

      UniProtKB/TrEMBL
      A0A9J7ZG99, A0A9Q9Z2G6
      Conserved Domains (6) summary
      COG0666
      Location:509 → 639
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd13251
      Location:256 → 362
      PH_ASAP; ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain
      sd00045
      Location:544 → 577
      ANK; ANK repeat [structural motif]
      cl28907
      Location:378 → 500
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
      cl12013
      Location:1 → 204
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:889 → 944
      SH3; Src Homology 3 domain superfamily
    Nucleotide Protein
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