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    Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 [ Dipodomys spectabilis (banner-tailed kangaroo rat) ]

    Gene ID: 122119567, updated on 20-Sep-2024

    Summary

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    Gene symbol
    Smarca4
    Gene description
    SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dipodomys spectabilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
    Orthologs
    human mouse all
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    Genomic context

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    See Smarca4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    100 current ASM1905484v1 (GCF_019054845.1) Unplaced Scaffold NW_024870850.1 (11016627..11089961)

    NW_024870850.1Genomic Context describing neighboring genes Neighboring gene Yip1 domain family member 2 Neighboring gene translocase of inner mitochondrial membrane 29 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene low density lipoprotein receptor Neighboring gene SPC24 component of NDC80 kinetochore complex

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024870850 Unplaced Scaffold Reference ASM1905484v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription activator BRG1
    Names
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dipodomys spectabilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1905484v1

    Genomic

    1. NW_024870850.1 Reference ASM1905484v1

      Range
      11016627..11089961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042693575.1 → XP_042549509.1  transcription activator BRG1 isoform X1

      Conserved Domains (8) summary
      cd05516
      Location:1461 → 1567
      Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
      smart00592
      Location:612 → 656
      BRK; domain in transcription and CHROMO domain helicases
      smart00573
      Location:460 → 532
      HSA; domain in helicases and associated with SANT domains
      smart00951
      Location:171 → 204
      QLQ; QLQ is named after the conserved Gln, Leu, Gln motif
      PLN03142
      Location:750 → 1232
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG1196
      Location:370 → 552
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09606
      Location:41 → 217
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd18062
      Location:731 → 981
      DEXHc_SMARCA4; DEXH-box helicase domain of SMARCA4

    2. XM_042693577.1 → XP_042549511.1  transcription activator BRG1 isoform X2

      Conserved Domains (8) summary
      cd05516
      Location:1458 → 1564
      Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
      smart00592
      Location:612 → 656
      BRK; domain in transcription and CHROMO domain helicases
      smart00573
      Location:460 → 532
      HSA; domain in helicases and associated with SANT domains
      smart00951
      Location:171 → 204
      QLQ; QLQ is named after the conserved Gln, Leu, Gln motif
      PLN03142
      Location:750 → 1232
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG1196
      Location:370 → 552
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09606
      Location:44 → 217
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd18062
      Location:731 → 981
      DEXHc_SMARCA4; DEXH-box helicase domain of SMARCA4

    3. XM_042693578.1 → XP_042549512.1  transcription activator BRG1 isoform X3

      Conserved Domains (8) summary
      cd05516
      Location:1428 → 1534
      Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
      smart00592
      Location:612 → 656
      BRK; domain in transcription and CHROMO domain helicases
      smart00573
      Location:460 → 532
      HSA; domain in helicases and associated with SANT domains
      smart00951
      Location:171 → 204
      QLQ; QLQ is named after the conserved Gln, Leu, Gln motif
      PLN03142
      Location:750 → 1232
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG1196
      Location:370 → 552
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09606
      Location:41 → 217
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd18062
      Location:731 → 981
      DEXHc_SMARCA4; DEXH-box helicase domain of SMARCA4

    4. XM_042693579.1 → XP_042549513.1  transcription activator BRG1 isoform X4

      Conserved Domains (8) summary
      cd05516
      Location:1425 → 1531
      Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
      smart00592
      Location:612 → 656
      BRK; domain in transcription and CHROMO domain helicases
      smart00573
      Location:460 → 532
      HSA; domain in helicases and associated with SANT domains
      smart00951
      Location:171 → 204
      QLQ; QLQ is named after the conserved Gln, Leu, Gln motif
      PLN03142
      Location:750 → 1232
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG1196
      Location:370 → 552
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09606
      Location:41 → 217
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd18062
      Location:731 → 981
      DEXHc_SMARCA4; DEXH-box helicase domain of SMARCA4

    5. XM_042693576.1 → XP_042549510.1  transcription activator BRG1 isoform X1

      Conserved Domains (8) summary
      cd05516
      Location:1461 → 1567
      Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
      smart00592
      Location:612 → 656
      BRK; domain in transcription and CHROMO domain helicases
      smart00573
      Location:460 → 532
      HSA; domain in helicases and associated with SANT domains
      smart00951
      Location:171 → 204
      QLQ; QLQ is named after the conserved Gln, Leu, Gln motif
      PLN03142
      Location:750 → 1232
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG1196
      Location:370 → 552
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam09606
      Location:41 → 217
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd18062
      Location:731 → 981
      DEXHc_SMARCA4; DEXH-box helicase domain of SMARCA4
    Nucleotide Protein
    Heading Accession and Version

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