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    LOC121905978 collagen alpha-6(VI) chain-like [ Thunnus maccoyii (southern bluefin tuna) ]

    Gene ID: 121905978, updated on 8-May-2024

    Summary

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    Gene symbol
    LOC121905978
    Gene description
    collagen alpha-6(VI) chain-like
    See related
    EnsemblRapid:ENSTMYG00005002955
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thunnus maccoyii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
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    Genomic context

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    See LOC121905978 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    100 current fThuMac1.1 (GCF_910596095.1) 10 NC_056542.1 (1788146..1871022)

    Chromosome 10 - NC_056542.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-6(VI) chain-like Neighboring gene collagen alpha-6(VI) chain-like Neighboring gene phosphoinositide-3-kinase, regulatory subunit 4 Neighboring gene ATPase secretory pathway Ca2+ transporting 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056542.1 Chromosome 10 Reference fThuMac1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-6(VI) chain-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Thunnus maccoyii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fThuMac1.1 Primary Assembly

    Genomic

    1. NC_056542.1 Reference fThuMac1.1 Primary Assembly

      Range
      1788146..1871022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042424596.1 → XP_042280530.1  collagen alpha-6(VI) chain-like isoform X1

      Conserved Domains (7) summary
      smart00327
      Location:2152 → 2323
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:1772 → 1979
      PHA03169; hypothetical protein; Provisional
      COG3087
      Location:2561 → 2663
      FtsN; Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:2734 → 2788
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      cd01450
      Location:1196 → 1357
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:825 → 986
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:618 → 783
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    2. XM_042424595.1 → XP_042280529.1  collagen alpha-6(VI) chain-like isoform X1

      Related
      ENSTMYP00005006152.1, ENSTMYT00005007159.1
      Conserved Domains (7) summary
      smart00327
      Location:2152 → 2323
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:1772 → 1979
      PHA03169; hypothetical protein; Provisional
      COG3087
      Location:2561 → 2663
      FtsN; Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:2734 → 2788
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      cd01450
      Location:1196 → 1357
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:825 → 986
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:618 → 783
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    3. XM_042424597.1 → XP_042280531.1  collagen alpha-6(VI) chain-like isoform X2

      Conserved Domains (7) summary
      smart00327
      Location:2152 → 2323
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:1772 → 1979
      PHA03169; hypothetical protein; Provisional
      COG3087
      Location:2561 → 2663
      FtsN; Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:2752 → 2803
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      cd01450
      Location:1196 → 1357
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:825 → 986
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:618 → 783
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    4. XM_042424598.1 → XP_042280532.1  collagen alpha-6(VI) chain-like isoform X3

      Conserved Domains (7) summary
      smart00327
      Location:1949 → 2120
      VWA; von Willebrand factor (vWF) type A domain
      PHA03169
      Location:1569 → 1776
      PHA03169; hypothetical protein; Provisional
      COG3087
      Location:2358 → 2460
      FtsN; Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning]
      cd00109
      Location:2531 → 2585
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      cd01450
      Location:993 → 1154
      vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cd01472
      Location:622 → 783
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      cl00057
      Location:415 → 580
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Nucleotide Protein
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