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    TpnT Troponin T, skeletal muscle [ Homarus americanus (American lobster) ]

    Gene ID: 121860664, updated on 6-Jul-2024

    Summary

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    Gene symbol
    TpnT
    Gene description
    Troponin T, skeletal muscle
    Locus tag
    Hamer_G024033
    See related
    EnsemblRapid:LOC121860664
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Homarus americanus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
    Also known as
    Tnnt-L
    Orthologs
    fruit fly all
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    Genomic context

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    See TpnT in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024720584.1 (270904..305909)

    NW_024720584.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121860665 Neighboring gene transmembrane protein 165-like Neighboring gene potassium channel subfamily K member 15-like Neighboring gene tyrosine-protein kinase Srms-like Neighboring gene tyrosine protein-kinase src-1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024720584 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome. Christie AE, et al. Gen Comp Endocrinol, 2017 Mar 1. PMID 27823957, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tropomyosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sarcomere organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of troponin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    troponin T, skeletal muscle-like; troponin T-like
    Names
    Troponin T-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GMGI_Hamer_2.0 Primary Assembly

    Genomic

    1. NW_024720584.1 Reference GMGI_Hamer_2.0 Primary Assembly

      Range
      270904..305909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042357936.1 → XP_042213870.1  troponin T, skeletal muscle-like isoform X7

      Related
      XP_042213870.1, XM_042357936.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 155
      PTZ00121; MAEBL; Provisional

    2. XM_042357931.1 → XP_042213865.1  troponin T-like isoform X2

      Related
      XP_042213865.1, XM_042357931.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 317
      PTZ00121; MAEBL; Provisional

    3. XM_042357935.1 → XP_042213869.1  troponin T, skeletal muscle-like isoform X6

      Related
      XP_042213869.1, XM_042357935.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 289
      PTZ00121; MAEBL; Provisional

    4. XM_042357938.1 → XP_042213872.1  troponin T, skeletal muscle-like isoform X9

      Related
      XP_042213872.1, XM_042357938.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 289
      PTZ00121; MAEBL; Provisional

    5. XM_042357939.1 → XP_042213873.1  troponin T-like isoform X10

      Related
      XP_042213873.1, XM_042357939.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 317
      PTZ00121; MAEBL; Provisional

    6. XM_042357934.1 → XP_042213868.1  troponin T, skeletal muscle-like isoform X5

      Related
      XP_042213868.1, XM_042357934.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 331
      PTZ00121; MAEBL; Provisional

    7. XM_042357932.1 → XP_042213866.1  troponin T, skeletal muscle-like isoform X3

      Related
      XP_042213866.1, XM_042357932.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 289
      PTZ00121; MAEBL; Provisional

    8. XM_042357933.1 → XP_042213867.1  troponin T, skeletal muscle-like isoform X4

      Related
      XP_042213867.1, XM_042357933.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 289
      PTZ00121; MAEBL; Provisional

    9. XM_042357929.1 → XP_042213863.1  troponin T-like isoform X1

      Related
      XP_042213863.1, XM_042357929.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 317
      PTZ00121; MAEBL; Provisional

    10. XM_042357940.1 → XP_042213874.1  troponin T, skeletal muscle-like isoform X11

      Related
      XP_042213874.1, XM_042357940.1
      Conserved Domains (1) summary
      PTZ00121
      Location:28 → 326
      PTZ00121; MAEBL; Provisional

    11. XM_042357944.1 → XP_042213878.1  troponin T, skeletal muscle-like isoform X14

      Related
      XP_042213878.1, XM_042357944.1
      Conserved Domains (1) summary
      PTZ00121
      Location:11 → 235
      PTZ00121; MAEBL; Provisional

    12. XM_042357943.1 → XP_042213877.1  troponin T, skeletal muscle-like isoform X13

      Related
      XP_042213877.1, XM_042357943.1
      Conserved Domains (1) summary
      PTZ00121
      Location:11 → 228
      PTZ00121; MAEBL; Provisional

    13. XM_042357937.1 → XP_042213871.1  troponin T, skeletal muscle-like isoform X8

      Related
      XP_042213871.1, XM_042357937.1
      Conserved Domains (1) summary
      PTZ00121
      Location:29 → 331
      PTZ00121; MAEBL; Provisional

    14. XM_042357942.1 → XP_042213876.1  troponin T, skeletal muscle-like isoform X12

      Related
      XP_042213876.1, XM_042357942.1
      Conserved Domains (1) summary
      PTZ00121
      Location:4 → 294
      PTZ00121; MAEBL; Provisional
    Nucleotide Protein
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