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    LOC100799156 40S ribosomal protein S3-3 [ Glycine max (soybean) ]

    Gene ID: 100799156, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100799156
    Gene description
    40S ribosomal protein S3-3
    Locus tag
    GLYMA_10G133100v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100799156 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (35943954..35945869)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (35790464..35792468)

    Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type protein 1 Neighboring gene uncharacterized TPR repeat-containing protein At1g05150 Neighboring gene uncharacterized LOC100802002 Neighboring gene zinc finger MYM-type protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S3-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      35943954..35945869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003535938.4 → XP_003535986.1  40S ribosomal protein S3-3 isoform X2

      See identical proteins and their annotated locations for XP_003535986.1

      UniProtKB/TrEMBL
      A0A0R0I0B9, C6SW15
      Conserved Domains (1) summary
      PTZ00084
      Location:3 → 219
      PTZ00084; 40S ribosomal protein S3; Provisional

    2. XM_041005691.1 → XP_040861625.1  40S ribosomal protein S3-3 isoform X1

      UniProtKB/TrEMBL
      C6SW15
      Conserved Domains (1) summary
      PTZ00084
      Location:3 → 258
      PTZ00084; 40S ribosomal protein S3; Provisional
    Nucleotide Protein
    Heading Accession and Version

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