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    Samd1 sterile alpha motif domain containing 1 [ Mesocricetus auratus (golden hamster) ]

    Gene ID: 101838989, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Samd1
    Gene description
    sterile alpha motif domain containing 1
    See related
    EnsemblRapid:ENSMAUG00000011537
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mesocricetus auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
    Orthologs
    human mouse all
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    Genomic context

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    See Samd1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429237.1 (557144..559957, complement)
    102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801882.1 (419728..421698)

    NW_024429237.1Genomic Context describing neighboring genes Neighboring gene MISP family member 3 Neighboring gene chromosome unknown C19orf67 homolog Neighboring gene protein kinase cAMP-activated catalytic subunit alpha Neighboring gene anti-silencing function 1B histone chaperone

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    atherin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Maur_2.0 Primary Assembly

    Genomic

    1. NW_024429237.1 Reference BCM_Maur_2.0 Primary Assembly

      Range
      557144..559957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005087561.4 → XP_005087618.3  atherin

      Related
      ENSMAUP00000010745.2, ENSMAUT00000014618.2
      Conserved Domains (1) summary
      cd09583
      Location:441 → 509
      SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily
    Nucleotide Protein
    Heading Accession and Version

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