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    SEMA4D semaphorin 4D [ Cygnus olor (mute swan) ]

    Gene ID: 121061508, updated on 22-Mar-2024

    Summary

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    Gene symbol
    SEMA4D
    Gene description
    semaphorin 4D
    See related
    EnsemblRapid:ENSCOLG00015013154
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus olor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA4D in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current bCygOlo1.pri.v2 (GCF_009769625.2) Z NC_049198.1 (45732768..45827950, complement)

    Chromosome Z - NC_049198.1Genomic Context describing neighboring genes Neighboring gene SECIS binding protein 2 Neighboring gene CDC28 protein kinase regulatory subunit 2 Neighboring gene uncharacterized LOC121061990 Neighboring gene growth arrest and DNA damage inducible gamma

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049198.1 Chromosome Z Reference bCygOlo1.pri.v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of alkaline phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ossification involved in bone maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-4D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cygnus olor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCygOlo1.pri.v2 Primary Assembly

    Genomic

    1. NC_049198.1 Reference bCygOlo1.pri.v2 Primary Assembly

      Range
      45732768..45827950 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040540430.1 → XP_040396364.1  semaphorin-4D isoform X3

      Conserved Domains (2) summary
      cd11259
      Location:27 → 497
      Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
      smart00423
      Location:499 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins

    2. XM_040540429.1 → XP_040396363.1  semaphorin-4D isoform X2

      Conserved Domains (2) summary
      cd11259
      Location:27 → 497
      Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
      smart00423
      Location:499 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins

    3. XM_040540428.1 → XP_040396362.1  semaphorin-4D isoform X1

      Conserved Domains (3) summary
      cd11259
      Location:27 → 497
      Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
      smart00409
      Location:565 → 619
      IG; Immunoglobulin
      smart00423
      Location:499 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins

    4. XM_040540424.1 → XP_040396358.1  semaphorin-4D isoform X1

      Related
      ENSCOLP00015021683.1, ENSCOLT00015024153.1
      Conserved Domains (3) summary
      cd11259
      Location:27 → 497
      Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
      smart00409
      Location:565 → 619
      IG; Immunoglobulin
      smart00423
      Location:499 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins

    5. XM_040540425.1 → XP_040396359.1  semaphorin-4D isoform X1

      Conserved Domains (3) summary
      cd11259
      Location:27 → 497
      Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
      smart00409
      Location:565 → 619
      IG; Immunoglobulin
      smart00423
      Location:499 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins

    6. XM_040540426.1 → XP_040396360.1  semaphorin-4D isoform X1

      Conserved Domains (3) summary
      cd11259
      Location:27 → 497
      Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
      smart00409
      Location:565 → 619
      IG; Immunoglobulin
      smart00423
      Location:499 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins

    7. XM_040540431.1 → XP_040396365.1  semaphorin-4D isoform X4

      Conserved Domains (2) summary
      cd11259
      Location:27 → 497
      Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
      smart00423
      Location:499 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins
    Nucleotide Protein
    Heading Accession and Version

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