U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC112179019 E3 ubiquitin-protein ligase RING1 [ Rosa chinensis ]

    Gene ID: 112179019, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC112179019
    Gene description
    E3 ubiquitin-protein ligase RING1
    Locus tag
    RchiOBHm_Chr7g0177241
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rosa chinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC112179019 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current RchiOBHm-V2 (GCF_002994745.2) 7 NC_037094.1 (295862..300115, complement)

    Chromosome 7 - NC_037094.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit INH3 Neighboring gene uncharacterized LOC112179020 Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2 Neighboring gene transfer RNA phenylalanine (anticodon GAA)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037094.1 Chromosome 7 Reference RchiOBHm-V2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase RING1
    Names
    putative aminoacyltransferase, E1 ubiquitin-activating enzyme

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Rosa chinensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RchiOBHm-V2

    Genomic

    1. NC_037094.1 Reference RchiOBHm-V2

      Range
      295862..300115 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040510939.1 → XP_040366873.1  E3 ubiquitin-protein ligase RING1

      UniProtKB/TrEMBL
      A0A2P6P1I4
      Conserved Domains (3) summary
      COG5243
      Location:209 → 363
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd16667
      Location:223 → 265
      RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
      pfam14369
      Location:14 → 48
      zinc_ribbon_9; zinc-ribbon

    2. XM_024317317.2 → XP_024173085.1  E3 ubiquitin-protein ligase RING1

      UniProtKB/TrEMBL
      A0A2P6P1I4
      Conserved Domains (3) summary
      COG5243
      Location:209 → 363
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd16667
      Location:223 → 265
      RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
      pfam14369
      Location:14 → 48
      zinc_ribbon_9; zinc-ribbon
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases