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    DDX54 DEAD-box helicase 54 [ Bufo bufo (common toad) ]

    Gene ID: 120988889, updated on 21-Mar-2024

    Summary

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    Gene symbol
    DDX54
    Gene description
    DEAD-box helicase 54
    See related
    EnsemblRapid:ENSBBFG00005005198
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bufo bufo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
    Orthologs
    human mouse all
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    Genomic context

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    See DDX54 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current aBufBuf1.1 (GCF_905171765.1) 2 NC_053390.1 (286807387..286832296)

    Chromosome 2 - NC_053390.1Genomic Context describing neighboring genes Neighboring gene IQ motif containing D Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene cilia and flagella associated protein 73 Neighboring gene RAS protein activator like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053390.1 Chromosome 2 Reference aBufBuf1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX54

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aBufBuf1.1

    Genomic

    1. NC_053390.1 Reference aBufBuf1.1

      Range
      286807387..286832296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040416656.1 → XP_040272590.1  ATP-dependent RNA helicase DDX54 isoform X3

      Conserved Domains (2) summary
      cd18787
      Location:291 → 422
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17959
      Location:76 → 280
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54

    2. XM_040416655.1 → XP_040272589.1  ATP-dependent RNA helicase DDX54 isoform X2

      Conserved Domains (2) summary
      cd18787
      Location:290 → 421
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17959
      Location:75 → 279
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54

    3. XM_040416654.1 → XP_040272588.1  ATP-dependent RNA helicase DDX54 isoform X1

      Related
      ENSBBFP00005007685.1, ENSBBFT00005008126.1
      Conserved Domains (2) summary
      cd18787
      Location:291 → 422
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17959
      Location:76 → 280
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54
    Nucleotide Protein
    Heading Accession and Version

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