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    Bsnd barttin CLCNK type accessory subunit beta [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

    Gene ID: 101957719, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Bsnd
    Gene description
    barttin CLCNK type accessory subunit beta
    Locus tag
    H1C71_033770
    See related
    EnsemblRapid:ENSSTOG00015007614
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictidomys tridecemlineatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
    Orthologs
    human mouse all
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    Genomic context

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    See Bsnd in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405058.1 (69077490..69086314)
    102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936522.1 (6329981..6338825, complement)

    NW_024405058.1Genomic Context describing neighboring genes Neighboring gene 24-dehydrocholesterol reductase Neighboring gene transmembrane protein 61 Neighboring gene proprotein convertase subtilisin/kexin type 9 Neighboring gene ubiquitin specific peptidase 24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chloride channel regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloride transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basolateral plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    barttin
    Names
    Bartter syndrome, infantile, with sensorineural deafness (Barttin)
    barttin CLCNK type accessory beta subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HiC_Itri_2 Primary Assembly

    Genomic

    1. NW_024405058.1 Reference HiC_Itri_2 Primary Assembly

      Range
      69077490..69086314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021726869.2 → XP_021582544.1  barttin

      UniProtKB/TrEMBL
      I3M3J9
      Related
      ENSSTOP00015009309.1, ENSSTOT00015010251.1
      Conserved Domains (1) summary
      pfam15462
      Location:27 → 247
      Barttin; Bartter syndrome, infantile, with sensorineural deafness (Barttin)
    Nucleotide Protein
    Heading Accession and Version

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