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    GABPB1 GA binding protein transcription factor subunit beta 1 [ Pteropus giganteus (Indian flying fox) ]

    Gene ID: 120623115, updated on 30-Mar-2024

    Summary

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    Gene symbol
    GABPB1
    Gene description
    GA binding protein transcription factor subunit beta 1
    See related
    EnsemblRapid:ENSPGIG00000013661
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pteropus giganteus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
    Orthologs
    human mouse all
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    Genomic context

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    See GABPB1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Ma_sr-lr_union100 (GCF_902729225.1) Unplaced Scaffold NW_024349801.1 (21421974..21478540)

    NW_024349801.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 8 Neighboring gene uncharacterized LOC120623112 Neighboring gene histidine decarboxylase Neighboring gene U4 spliceosomal RNA Neighboring gene solute carrier family 27 member 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024349801 Unplaced Scaffold Reference Ma_sr-lr_union100

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GA-binding protein subunit beta-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pteropus giganteus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ma_sr-lr_union100

    Genomic

    1. NW_024349801.1 Reference Ma_sr-lr_union100

      Range
      21421974..21478540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039889072.1 → XP_039745006.1  GA-binding protein subunit beta-1 isoform X3

      Conserved Domains (4) summary
      sd00045
      Location:38 → 68
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:10 → 58
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:42 → 133
      Ank_2; Ankyrin repeats (3 copies)
      pfam16566
      Location:341 → 390
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    2. XM_039889074.1 → XP_039745008.1  GA-binding protein subunit beta-1 isoform X5

      Conserved Domains (4) summary
      sd00045
      Location:38 → 68
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:10 → 58
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:42 → 133
      Ank_2; Ankyrin repeats (3 copies)
      pfam16566
      Location:329 → 378
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    3. XM_039889070.1 → XP_039745004.1  GA-binding protein subunit beta-1 isoform X3

      Related
      ENSPGIP00000011532.1, ENSPGIT00000017935.1
      Conserved Domains (4) summary
      sd00045
      Location:38 → 68
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:10 → 58
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:42 → 133
      Ank_2; Ankyrin repeats (3 copies)
      pfam16566
      Location:341 → 390
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    4. XM_039889073.1 → XP_039745007.1  GA-binding protein subunit beta-1 isoform X3

      Conserved Domains (4) summary
      sd00045
      Location:38 → 68
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:10 → 58
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:42 → 133
      Ank_2; Ankyrin repeats (3 copies)
      pfam16566
      Location:341 → 390
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    5. XM_039889068.1 → XP_039745002.1  GA-binding protein subunit beta-1 isoform X1

      Conserved Domains (4) summary
      sd00045
      Location:38 → 68
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:10 → 58
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:42 → 133
      Ank_2; Ankyrin repeats (3 copies)
      pfam16566
      Location:340 → 389
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    6. XM_039889069.1 → XP_039745003.1  GA-binding protein subunit beta-1 isoform X2

      Conserved Domains (4) summary
      sd00045
      Location:38 → 68
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:10 → 58
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:42 → 133
      Ank_2; Ankyrin repeats (3 copies)
      pfam16566
      Location:328 → 377
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    7. XM_039889071.1 → XP_039745005.1  GA-binding protein subunit beta-1 isoform X4

      Conserved Domains (3) summary
      sd00045
      Location:38 → 68
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:10 → 58
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:42 → 133
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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