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    LOC11443480 pre-mRNA-splicing factor cwf22 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11443480, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11443480
    Gene description
    pre-mRNA-splicing factor cwf22
    Locus tag
    MtrunA17_Chr7g0258901
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11443480 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (44044183..44045907)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (37183191..37185090)

    Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene activator of 90 kDa heat shock protein ATPase homolog Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 23 Neighboring gene DNA-3-methyladenine glycosylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: pre-mRNA-splicing factor cwf22
    Names
    pre-mRNA-splicing factor CWC22-like protein
    putative initiation factor eIF-4 gamma, MA3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      44044183..44045907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003625239.3 → XP_003625287.2  LOW QUALITY PROTEIN: pre-mRNA-splicing factor cwf22

      UniProtKB/TrEMBL
      G7KW95
      Conserved Domains (2) summary
      smart00543
      Location:25 → 206
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      smart00544
      Location:308 → 415
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
    Nucleotide Protein
    Heading Accession and Version

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