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    LOC25499201 phospholipase A1-Igamma2, chloroplastic-like [ Medicago truncatula (barrel medic) ]

    Gene ID: 25499201, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25499201
    Gene description
    phospholipase A1-Igamma2, chloroplastic-like
    Locus tag
    MtrunA17_Chr7g0260681
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25499201 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (45420579..45425289)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (38551953..38556648)

    Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene putative uridine kinase C227.14 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene phospholipase A1-Igamma2, chloroplastic Neighboring gene photosystem II reaction center W protein, chloroplastic Neighboring gene probable galacturonosyltransferase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: phospholipase A1-Igamma2, chloroplastic-like
    Names
    phospholipase A1-Igamma 2
    phospholipase A1-Igamma2, chloroplastic
    putative carboxylic ester hydrolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      45420579..45425289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039827577.1 → XP_039683511.1  LOW QUALITY PROTEIN: phospholipase A1-Igamma2, chloroplastic-like

      UniProtKB/TrEMBL
      A0A072U2D6
      Conserved Domains (1) summary
      cl21494
      Location:53 → 502
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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