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    LOC112422237 neurofilament heavy polypeptide-like [ Medicago truncatula (barrel medic) ]

    Gene ID: 112422237, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC112422237
    Gene description
    neurofilament heavy polypeptide-like
    Locus tag
    MtrunA17_Chr5g0411461
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC112422237 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (12966790..12972750, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (13056057..13062009, complement)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene probable sphingolipid transporter spinster homolog 2 Neighboring gene probable starch synthase 4, chloroplastic/amyloplastic Neighboring gene transfer RNA leucine (anticodon UAG) Neighboring gene uncharacterized LOC112422033 Neighboring gene phosphoenolpyruvate carboxykinase (ATP) 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neurofilament heavy polypeptide-like
    Names
    SPT2 chromatin protein
    neurofilament heavy polypeptide
    putative IQ motif, EF-hand binding, chromatin SPT2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      12966790..12972750 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024785262.2 → XP_024641030.1  neurofilament heavy polypeptide-like

      UniProtKB/TrEMBL
      G7KF49
      Conserved Domains (1) summary
      smart00784
      Location:349 → 430
      SPT2; SPT2 chromatin protein

    2. XM_024785263.2 → XP_024641031.1  neurofilament heavy polypeptide-like

      UniProtKB/TrEMBL
      G7KF49
      Conserved Domains (1) summary
      smart00784
      Location:349 → 430
      SPT2; SPT2 chromatin protein
    Nucleotide Protein
    Heading Accession and Version

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