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    ZBTB47 zinc finger and BTB domain containing 47 [ Mauremys reevesii (Reeves's turtle) ]

    Gene ID: 120399249, updated on 21-Mar-2024

    Summary

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    Gene symbol
    ZBTB47
    Gene description
    zinc finger and BTB domain containing 47
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys reevesii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See ZBTB47 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly LG Location
    100 current ASM1616193v1 (GCF_016161935.1) 2 NC_052624.1 (9072090..9163537, complement)

    Linkage Group 2 - NC_052624.1Genomic Context describing neighboring genes Neighboring gene hedgehog acyltransferase like Neighboring gene kelch like family member 40 Neighboring gene uncharacterized LOC120397488 Neighboring gene natural killer cell triggering receptor Neighboring gene uncharacterized LOC120398434

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052624.1 Chromosome 2 Reference ASM1616193v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1616193v1 Primary Assembly

    Genomic

    1. NC_052624.1 Reference ASM1616193v1 Primary Assembly

      Range
      9072090..9163537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039527338.1 → XP_039383272.1  zinc finger and BTB domain-containing protein 47 isoform X4

      Conserved Domains (4) summary
      COG5048
      Location:599 → 648
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:541 → 624
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:547 → 567
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:29 → 143
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    2. XM_039527337.1 → XP_039383271.1  zinc finger and BTB domain-containing protein 47 isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:571 → 620
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:513 → 596
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:519 → 539
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:1 → 115
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    3. XM_039527335.1 → XP_039383269.1  zinc finger and BTB domain-containing protein 47 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:599 → 648
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:541 → 624
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:547 → 567
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:29 → 143
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    4. XM_039527336.1 → XP_039383270.1  zinc finger and BTB domain-containing protein 47 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:599 → 648
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:541 → 624
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:547 → 567
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:29 → 143
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)
    Nucleotide Protein
    Heading Accession and Version

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