seld-1 putative selenide, water dikinase [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: seld-1
Official Full Name: putative selenide, water dikinase
Primary source: WormBase:WBGene00012867
Locus tag: CELE_Y45F10A.4
See related: AllianceGenome:WB:WBGene00012867
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable selenide, water dikinase activity. Predicted to be involved in selenocysteine biosynthetic process. Predicted to be active in cytoplasm. Orthologous to several human genes including SEPHS2 (selenophosphate synthetase 2). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See seld-1 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 4

Sequence:: Chromosome: IV; NC_003282.8 (13506079..13509215)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

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Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y45F10A.5 (e-PCR)
- UniSTS:305747

Y45F10A.4 (e-PCR)
- UniSTS:313314

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables kinase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables selenide, water dikinase activity	IBA Inferred from Biological aspect of Ancestor more info
enables selenide, water dikinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in selenocysteine biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: putative selenide, water dikinase

NP_001369794.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

13506079..13509215

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001383238.2 → NP_001369794.1 putative selenide, water dikinase [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/Swiss-Prot

O62461

Conserved Domains (1) summary

cd02195
Location:24 → 353

SelD; Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The ...