U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    grl-16 Ground-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171649, updated on 17-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    grl-16
    Official Full Name
    Ground-like domain-containing protein
    Primary source
    WormBase:WBGene00001725
    Locus tag
    CELE_Y65B4BR.6
    See related
    AllianceGenome:WB:WBGene00001725
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See grl-16 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (572173..575120, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Lipase_GDSL domain-containing protein Neighboring gene Homeobox protein ceh-9 Neighboring gene RING-type domain-containing protein Neighboring gene Secreted protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. JMJD-1.2/PHF8 controls axon guidance by regulating Hedgehog-like signaling. Riveiro AR, et al. Development, 2017 Mar 1. PMID 28126843
    2. Comprehensive analysis of gene expression patterns of hedgehog-related genes. Hao L, et al. BMC Genomics, 2006 Oct 31. PMID 17076889, Free PMC Article
    3. Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif. Bürglin TR. BMC Genomics, 2008 Mar 11. PMID 18334026, Free PMC Article
    4. Meta-Analysis of Caenorhabditis elegans Transcriptomics Implicates Hedgehog-Like Signaling in Host-Microbe Interactions. Zárate-Potes A, et al. Front Microbiol, 2022. PMID 35620104, Free PMC Article
    5. Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes. Suriyalaksh M, et al. iScience, 2022 Jan 21. PMID 35036864, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ground-like domain-containing protein
    NP_490754.1
    • Confirmed by transcript evidence
    NP_871875.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      572173..575120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058353.6 → NP_490754.1  Ground-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490754.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N2Z3
      Conserved Domains (2) summary
      PRK10811
      Location:177 → 315
      rne; ribonuclease E; Reviewed
      pfam04155
      Location:321 → 391
      Ground-like; Ground-like domain

    2. NM_182075.3 → NP_871875.1  Ground-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_871875.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L083
      Conserved Domains (2) summary
      PRK10811
      Location:199 → 371
      rne; ribonuclease E; Reviewed
      pfam04155
      Location:381 → 451
      Ground-like; Ground-like domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools