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    zbtb47b zinc finger and BTB domain containing 47b [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119966586, updated on 21-Mar-2024

    Summary

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    Gene symbol
    zbtb47b
    Gene description
    zinc finger and BTB domain containing 47b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
    Orthologs
    zebrafish all
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    Genomic context

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    See zbtb47b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 5 NC_052150.1 (218298869..218610624, complement)

    Chromosome 5 - NC_052150.1Genomic Context describing neighboring genes Neighboring gene hedgehog acyltransferase like, b Neighboring gene kelch-like family member 40b Neighboring gene 60S ribosomal protein L35a-like Neighboring gene natural killer cell triggering receptor Neighboring gene SEC22 homolog C, vesicle trafficking protein Neighboring gene vasoactive intestinal peptide receptor 1b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052150.1 Chromosome 5 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052150.1 Reference sScyCan1.1 Primary Assembly

      Range
      218298869..218610624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038798528.1 → XP_038654456.1  zinc finger and BTB domain-containing protein 47 isoform X3

      Conserved Domains (5) summary
      PLN03086
      Location:369 → 434
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:568 → 651
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:510 → 593
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:516 → 536
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:1 → 115
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    2. XM_038798529.1 → XP_038654457.1  zinc finger and BTB domain-containing protein 47 isoform X3

      Conserved Domains (5) summary
      PLN03086
      Location:369 → 434
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:568 → 651
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:510 → 593
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:516 → 536
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:1 → 115
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    3. XM_038798525.1 → XP_038654453.1  zinc finger and BTB domain-containing protein 47 isoform X2

      Conserved Domains (5) summary
      PLN03086
      Location:397 → 462
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:596 → 679
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:538 → 621
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:544 → 564
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:29 → 143
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    4. XM_038798527.1 → XP_038654455.1  zinc finger and BTB domain-containing protein 47 isoform X3

      Conserved Domains (5) summary
      PLN03086
      Location:369 → 434
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:568 → 651
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:510 → 593
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:516 → 536
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:1 → 115
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    5. XM_038798524.1 → XP_038654452.1  zinc finger and BTB domain-containing protein 47 isoform X1

      Conserved Domains (5) summary
      PLN03086
      Location:398 → 463
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:597 → 680
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:539 → 622
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:545 → 565
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:30 → 144
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)

    6. XM_038798526.1 → XP_038654454.1  zinc finger and BTB domain-containing protein 47 isoform X3

      Conserved Domains (5) summary
      PLN03086
      Location:369 → 434
      PLN03086; PRLI-interacting factor K; Provisional
      COG5048
      Location:568 → 651
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:510 → 593
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:516 → 536
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18231
      Location:1 → 115
      BTB_POZ_ZBTB47_ZNF651; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47)
    Nucleotide Protein
    Heading Accession and Version

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