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    mysm1 Myb-like, SWIRM and MPN domains 1 [ Acanthopagrus latus (yellowfin seabream) ]

    Gene ID: 119029352, updated on 21-Mar-2024

    Summary

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    Gene symbol
    mysm1
    Gene description
    Myb-like, SWIRM and MPN domains 1
    See related
    EnsemblRapid:ENSALTG00010014463
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthopagrus latus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
    Orthologs
    human zebrafish all
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    Genomic context

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    See mysm1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current fAcaLat1.1 (GCF_904848185.1) 11 NC_051049.1 (8373334..8379065, complement)

    Chromosome 11 - NC_051049.1Genomic Context describing neighboring genes Neighboring gene DAB adaptor protein 1a Neighboring gene OMA1 zinc metallopeptidase Neighboring gene SUN domain containing ossification factor Neighboring gene transmembrane p24 trafficking protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051049.1 Chromosome 11 Reference fAcaLat1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BRCA1-A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of BRISC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone H2A deubiquitinase MYSM1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAcaLat1.1 Primary Assembly

    Genomic

    1. NC_051049.1 Reference fAcaLat1.1 Primary Assembly

      Range
      8373334..8379065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037116147.1 → XP_036972042.1  histone H2A deubiquitinase MYSM1

      Related
      ENSALTP00010038797.1, ENSALTT00010041571.1
      Conserved Domains (3) summary
      cd08067
      Location:548 → 728
      MPN_2A_DUB; Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase
      pfam00249
      Location:107 → 150
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam04433
      Location:369 → 439
      SWIRM; SWIRM domain
    Nucleotide Protein
    Heading Accession and Version

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