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    KDM5A lysine demethylase 5A [ Balaenoptera musculus (blue whale) ]

    Gene ID: 118901581, updated on 20-Mar-2024

    Summary

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    Gene symbol
    KDM5A
    Gene description
    lysine demethylase 5A
    See related
    EnsemblRapid:ENSBMSG00010022403
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Balaenoptera musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
    Orthologs
    human mouse all
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    Genomic context

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    See KDM5A in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current mBalMus1.pri.v3 (GCF_009873245.2) 10 NC_045794.1 (2639633..2726686)

    Chromosome 10 - NC_045794.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 3 Neighboring gene coiled-coil domain containing 77 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene uncharacterized LOC118902066 Neighboring gene solute carrier family 6 member 13 Neighboring gene solute carrier family 6 member 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045794.1 Chromosome 10 Reference mBalMus1.pri.v3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 5A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Balaenoptera musculus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mBalMus1.pri.v3 Primary Assembly

    Genomic

    1. NC_045794.1 Reference mBalMus1.pri.v3 Primary Assembly

      Range
      2639633..2726686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036864818.1 → XP_036720713.1  lysine-specific demethylase 5A isoform X6

      UniProtKB/TrEMBL
      A0A8B8YEA9
      Conserved Domains (7) summary
      smart00545
      Location:18 → 59
      JmjN; Small domain found in the jumonji family of transcription factors
      cd15602
      Location:295 → 343
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
      cd15606
      Location:1163 → 1215
      PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
      cd16873
      Location:84 → 175
      ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
      pfam02373
      Location:470 → 586
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:676 → 728
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:741 → 1070
      PLU-1; PLU-1-like protein

    2. XM_036864813.1 → XP_036720708.1  lysine-specific demethylase 5A isoform X2

      UniProtKB/TrEMBL
      A0A8B8YEA6, A0A8C0E7V9
      Conserved Domains (8) summary
      smart00545
      Location:18 → 59
      JmjN; Small domain found in the jumonji family of transcription factors
      cd15602
      Location:295 → 343
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
      cd15606
      Location:1133 → 1185
      PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
      cd15686
      Location:1578 → 1629
      PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
      cd16873
      Location:84 → 175
      ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
      pfam02373
      Location:470 → 586
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:676 → 728
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:741 → 1040
      PLU-1; PLU-1-like protein

    3. XM_036864817.1 → XP_036720712.1  lysine-specific demethylase 5A isoform X5

      UniProtKB/TrEMBL
      A0A8B8YE99, A0A8C0E7V9
      Related
      ENSBMSP00010031053.2, ENSBMST00010034141.2
      Conserved Domains (8) summary
      smart00545
      Location:18 → 59
      JmjN; Small domain found in the jumonji family of transcription factors
      cd15602
      Location:295 → 343
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
      cd15606
      Location:1103 → 1155
      PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
      cd15686
      Location:1548 → 1599
      PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
      cd16873
      Location:84 → 175
      ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
      pfam02373
      Location:470 → 586
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:676 → 728
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:741 → 1012
      PLU-1; PLU-1-like protein

    4. XM_036864816.1 → XP_036720711.1  lysine-specific demethylase 5A isoform X4

      UniProtKB/TrEMBL
      A0A8C0E701, A0A8C0E7U8
      Related
      ENSBMSP00010031041.1, ENSBMST00010034129.2
      Conserved Domains (8) summary
      smart00545
      Location:18 → 59
      JmjN; Small domain found in the jumonji family of transcription factors
      cd15602
      Location:295 → 343
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
      cd15606
      Location:1106 → 1158
      PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
      cd15686
      Location:1551 → 1602
      PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
      cd16873
      Location:84 → 175
      ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
      pfam02373
      Location:470 → 529
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:619 → 671
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:684 → 1013
      PLU-1; PLU-1-like protein

    5. XM_036864814.1 → XP_036720709.1  lysine-specific demethylase 5A isoform X3

      UniProtKB/TrEMBL
      A0A8B8YFS5, A0A8C0E701
      Related
      ENSBMSP00010031047.2, ENSBMST00010034135.2
      Conserved Domains (8) summary
      smart00545
      Location:18 → 59
      JmjN; Small domain found in the jumonji family of transcription factors
      cd15602
      Location:250 → 298
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
      cd15606
      Location:1118 → 1170
      PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
      cd15686
      Location:1563 → 1614
      PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
      cd16873
      Location:84 → 175
      ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
      pfam02373
      Location:425 → 541
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:631 → 683
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:696 → 1025
      PLU-1; PLU-1-like protein

    6. XM_036864812.1 → XP_036720707.1  lysine-specific demethylase 5A isoform X1

      UniProtKB/TrEMBL
      A0A8B8YE95, A0A8C0E701
      Related
      ENSBMSP00010031040.1, ENSBMST00010034128.2
      Conserved Domains (8) summary
      smart00545
      Location:18 → 59
      JmjN; Small domain found in the jumonji family of transcription factors
      cd15602
      Location:295 → 343
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
      cd15606
      Location:1163 → 1215
      PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
      cd15686
      Location:1608 → 1659
      PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
      cd16873
      Location:84 → 175
      ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
      pfam02373
      Location:470 → 586
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:676 → 728
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:741 → 1070
      PLU-1; PLU-1-like protein
    Nucleotide Protein
    Heading Accession and Version

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