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    FAF1 Fas associated factor 1 [ Trichosurus vulpecula (common brushtail) ]

    Gene ID: 118846416, updated on 20-Mar-2024

    Summary

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    Gene symbol
    FAF1
    Gene description
    Fas associated factor 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichosurus vulpecula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phalangeridae; Trichosurus
    Orthologs
    human mouse all
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    Genomic context

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    See FAF1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current mTriVul1.pri (GCF_011100635.1) 4 NC_050576.1 (29093537..29514400)

    Chromosome 4 - NC_050576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118845633 Neighboring gene cyclin dependent kinase inhibitor 2C Neighboring gene protein kinase C zeta type-like Neighboring gene DMRT like family A2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_050576.1 Chromosome 4 Reference mTriVul1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NF-kappaB binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAS-associated factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trichosurus vulpecula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mTriVul1.pri Primary Assembly

    Genomic

    1. NC_050576.1 Reference mTriVul1.pri Primary Assembly

      Range
      29093537..29514400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036754937.1 → XP_036610832.1  FAS-associated factor 1 isoform X1

      Conserved Domains (6) summary
      cd02990
      Location:351 → 486
      UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
      cd14413
      Location:14 → 46
      UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
      cd01771
      Location:569 → 648
      UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
      cd17056
      Location:194 → 267
      Ubl_FAF1; ubiquitin-like (Ubl) domain found in FAS-associated factor 1 (FAF1) and similar proteins
      cd17129
      Location:100 → 172
      Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
      pfam17380
      Location:460 → 576
      DUF5401; Family of unknown function (DUF5401)

    2. XM_036754938.1 → XP_036610833.1  FAS-associated factor 1 isoform X2

      Conserved Domains (6) summary
      cd02990
      Location:350 → 485
      UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
      cd14413
      Location:14 → 46
      UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
      cd01771
      Location:568 → 647
      UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
      cd17056
      Location:194 → 267
      Ubl_FAF1; ubiquitin-like (Ubl) domain found in FAS-associated factor 1 (FAF1) and similar proteins
      cd17129
      Location:100 → 172
      Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
      pfam17380
      Location:459 → 575
      DUF5401; Family of unknown function (DUF5401)
    Nucleotide Protein
    Heading Accession and Version

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