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    Zfp939 zinc finger protein 939 [ Mus musculus (house mouse) ]

    Gene ID: 233147, updated on 27-Nov-2024

    Summary

    Official Symbol
    Zfp939provided by MGI
    Official Full Name
    zinc finger protein 939provided by MGI
    Primary source
    MGI:MGI:3036240
    See related
    Ensembl:ENSMUSG00000121502 AllianceGenome:MGI:3036240
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9430025M13Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 3.1), CNS E14 (RPKM 2.7) and 28 other tissues See more
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    Genomic context

    See Zfp939 in Genome Data Viewer
    Location:
    7 B3; 7 25.48 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (39098903..39126853)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (39449479..39477429)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 57511 Neighboring gene STARR-positive B cell enhancer ABC_E8168 Neighboring gene family with sequence similarity 32, member A pseudogene Neighboring gene predicted gene, 51478 Neighboring gene predicted gene 28455 Neighboring gene STARR-seq mESC enhancer starr_18699 Neighboring gene STARR-positive B cell enhancer ABC_E9109 Neighboring gene zinc finger protein 619 Neighboring gene predicted gene, 33989 Neighboring gene STARR-positive B cell enhancer ABC_E6538 Neighboring gene STARR-seq mESC enhancer starr_18702 Neighboring gene ribosomal protein S8 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243021.1NP_001229950.1  zinc finger protein 939

      Status: VALIDATED

      Source sequence(s)
      AC109210
      Related
      ENSMUST00000243338.1
      Conserved Domains (6) summary
      smart00349
      Location:463
      KRAB; krueppel associated box
      COG5048
      Location:160571
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:251271
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:443
      KRAB; KRAB box
      pfam06409
      Location:56195
      NPIP; Nuclear pore complex interacting protein (NPIP)
      pfam13465
      Location:292314
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. NR_157256.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC109210, AK034698, BB701290
      Related
      ENSMUST00000186855.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      39098903..39126853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242464.2XP_030098324.1  zinc finger protein 939 isoform X4

      Conserved Domains (4) summary
      smart00349
      Location:463
      KRAB; krueppel associated box
      COG5048
      Location:181342
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:431486
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:213233
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_011250851.3XP_011249153.1  zinc finger protein 939 isoform X3

      Conserved Domains (3) summary
      smart00349
      Location:463
      KRAB; krueppel associated box
      COG5048
      Location:181342
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:213233
      ZF_C2H2; C2H2 Zn finger [structural motif]
    3. XM_017322169.3XP_017177658.1  zinc finger protein 939 isoform X7

      Conserved Domains (3) summary
      COG5048
      Location:73234
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:323378
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:105125
      ZF_C2H2; C2H2 Zn finger [structural motif]
    4. XM_011250848.4XP_011249150.1  zinc finger protein 939 isoform X1

      Conserved Domains (3) summary
      smart00349
      Location:457
      KRAB; krueppel associated box
      COG5048
      Location:188349
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:220240
      ZF_C2H2; C2H2 Zn finger [structural motif]
    5. XM_036152962.1XP_036008855.1  zinc finger protein 939 isoform X5

      Conserved Domains (3) summary
      COG5048
      Location:149310
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:399454
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:181201
      ZF_C2H2; C2H2 Zn finger [structural motif]
    6. XM_036152961.1XP_036008854.1  zinc finger protein 939 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:187348
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:437492
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:219239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02581
      Location:131
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    7. XM_036152963.1XP_036008856.1  zinc finger protein 939 isoform X5

      Conserved Domains (3) summary
      COG5048
      Location:149310
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:399454
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:181201
      ZF_C2H2; C2H2 Zn finger [structural motif]
    8. XM_030242463.2XP_030098323.1  zinc finger protein 939 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:187348
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:437492
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:219239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02581
      Location:131
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    9. XM_011250849.2XP_011249151.1  zinc finger protein 939 isoform X2

      See identical proteins and their annotated locations for XP_011249151.1

      Conserved Domains (4) summary
      COG5048
      Location:187348
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:437492
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:219239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02581
      Location:131
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    10. XM_036152964.1XP_036008857.1  zinc finger protein 939 isoform X6

      Conserved Domains (3) summary
      COG5048
      Location:73234
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:323378
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:105125
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RNA

    1. XR_391336.4 RNA Sequence

      Related
      ENSMUST00000247552.1
    2. XR_004934077.1 RNA Sequence

    3. XR_004934076.1 RNA Sequence

    4. XR_391334.5 RNA Sequence

      Related
      ENSMUST00000244123.1
    5. XR_003946453.2 RNA Sequence

      Related
      ENSMUST00000245274.2
    6. XR_003946454.1 RNA Sequence

    7. XR_004934075.1 RNA Sequence