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    Gm8220 predicted gene 8220 [ Mus musculus (house mouse) ]

    Gene ID: 666660, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm8220provided by MGI
    Official Full Name
    predicted gene 8220provided by MGI
    Primary source
    MGI:MGI:3643828
    See related
    Ensembl:ENSMUSG00000091725 AllianceGenome:MGI:3643828
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG666660
    Expression
    Restricted expression toward testis adult (RPKM 2.7) See more
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    Genomic context

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    See Gm8220 in Genome Data Viewer
    Location:
    14 C1; 14 22.54 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (44523002..44528531)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (44285545..44291074)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700047E10 gene Neighboring gene STARR-seq mESC enhancer starr_36513 Neighboring gene STARR-seq mESC enhancer starr_36514 Neighboring gene predicted gene 8212 Neighboring gene STARR-seq mESC enhancer starr_36515 Neighboring gene predicted gene, 32857 Neighboring gene BCL2/adenovirus E1B interacting protein 1, NIP3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_36516 Neighboring gene STARR-seq mESC enhancer starr_36517 Neighboring gene STARR-seq mESC enhancer starr_36518 Neighboring gene predicted gene 5930 Neighboring gene predicted gene 8229 Neighboring gene STARR-seq mESC enhancer starr_36519 Neighboring gene predicted gene 3371 Neighboring gene predicted gene 8232

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC666660

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378717.1 → NP_001365646.1  uncharacterized protein LOC666660

      Status: VALIDATED

      Source sequence(s)
      AC161758
      UniProtKB/TrEMBL
      A0AA74KT89, F6VRJ8
      Related
      ENSMUSP00000159806.1, ENSMUST00000164663.9
      Conserved Domains (1) summary
      pfam04822
      Location:56 → 135
      Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      44523002..44528531
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158811.1 → XP_036014704.1  uncharacterized protein LOC666660 isoform X3

      Conserved Domains (1) summary
      pfam04822
      Location:56 → 135
      Takusan

    2. XM_036158810.1 → XP_036014703.1  uncharacterized protein LOC666660 isoform X1

      UniProtKB/TrEMBL
      F6VRJ8
      Conserved Domains (1) summary
      pfam04822
      Location:56 → 135
      Takusan

    3. XM_011245283.1 → XP_011243585.1  uncharacterized protein LOC666660 isoform X2

      See identical proteins and their annotated locations for XP_011243585.1

      Conserved Domains (1) summary
      pfam04822
      Location:10 → 90
      Takusan
    Nucleotide Protein
    Heading Accession and Version

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