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    LOC118546791 AT-rich interactive domain-containing protein 4B [ Halichoerus grypus (gray seal) ]

    Gene ID: 118546791, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC118546791
    Gene description
    AT-rich interactive domain-containing protein 4B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Halichoerus grypus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Halichoerus
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    Genomic context

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    See LOC118546791 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current Tufts_HGry_1.1 (GCF_012393455.1) Unplaced Scaffold NW_023399720.1 (9479..114728, complement)

    NW_023399720.1Genomic Context describing neighboring genes Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene tubulin folding cofactor E Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023399720 Unplaced Scaffold Reference Tufts_HGry_1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 4B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Halichoerus grypus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tufts_HGry_1.1

    Genomic

    1. NW_023399720.1 Reference Tufts_HGry_1.1

      Range
      9479..114728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036109741.1 → XP_035965634.1  AT-rich interactive domain-containing protein 4B isoform X1

      Conserved Domains (5) summary
      cd16883
      Location:308 → 399
      ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      pfam08169
      Location:170 → 263
      RBB1NT; RBB1NT (NUC162) domain
      cd20460
      Location:1 → 61
      Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cd20462
      Location:62 → 118
      Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cl28914
      Location:571 → 612
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

    2. XM_036109742.1 → XP_035965635.1  AT-rich interactive domain-containing protein 4B isoform X1

      Conserved Domains (5) summary
      cd16883
      Location:308 → 399
      ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      pfam08169
      Location:170 → 263
      RBB1NT; RBB1NT (NUC162) domain
      cd20460
      Location:1 → 61
      Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cd20462
      Location:62 → 118
      Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cl28914
      Location:571 → 612
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

    3. XM_036109740.1 → XP_035965633.1  AT-rich interactive domain-containing protein 4B isoform X1

      Conserved Domains (5) summary
      cd16883
      Location:308 → 399
      ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      pfam08169
      Location:170 → 263
      RBB1NT; RBB1NT (NUC162) domain
      cd20460
      Location:1 → 61
      Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cd20462
      Location:62 → 118
      Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cl28914
      Location:571 → 612
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

    4. XM_036109743.1 → XP_035965636.1  AT-rich interactive domain-containing protein 4B isoform X2

      Conserved Domains (4) summary
      cd16883
      Location:308 → 399
      ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      pfam08169
      Location:170 → 263
      RBB1NT; RBB1NT (NUC162) domain
      cd20460
      Location:1 → 61
      Tudor_ARID4B_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
      cd20462
      Location:62 → 118
      Tudor_ARID4B_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    Nucleotide Protein
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