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    ZGRF1 zinc finger GRF-type containing 1 [ Egretta garzetta (little egret) ]

    Gene ID: 104135721, updated on 3-Aug-2024

    Summary

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    Gene symbol
    ZGRF1
    Gene description
    zinc finger GRF-type containing 1
    Locus tag
    Z169_13793
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Egretta garzetta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
    Orthologs
    human mouse all
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    Genomic context

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    See ZGRF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258780.1 (132791..157619, complement)

    NW_009258780.1Genomic Context describing neighboring genes Neighboring gene TRAF interacting protein with forkhead associated domain Neighboring gene alpha kinase 1 Neighboring gene La ribonucleoprotein 7, transcriptional regulator Neighboring gene uncharacterized LOC118451730

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009258780 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ZGRF1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM68718v1 Primary Assembly

    Genomic

    1. NW_009258780.1 Reference ASM68718v1 Primary Assembly

      Range
      132791..157619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035889091.1 → XP_035744984.1  protein ZGRF1

      Conserved Domains (4) summary
      COG1112
      Location:1692 → 2100
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      pfam06839
      Location:1393 → 1437
      zf-GRF; GRF zinc finger
      pfam10382
      Location:4 → 74
      DUF2439; Protein of unknown function (DUF2439)
      pfam13087
      Location:1898 → 2082
      AAA_12; AAA domain
    Nucleotide Protein
    Heading Accession and Version

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