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    LOC118356653 BCL-6 corepressor-like [ Zalophus californianus (California sea lion) ]

    Gene ID: 118356653, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC118356653
    Gene description
    BCL-6 corepressor-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zalophus californianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
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    Genomic context

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    See LOC118356653 in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current mZalCal1.pri.v2 (GCF_009762305.2) Y NC_045613.1 (3031888..3146645, complement)

    Chromosome Y - NC_045613.1Genomic Context describing neighboring genes Neighboring gene sex determining region Y Neighboring gene ubiquitin-like modifier-activating enzyme 1 Neighboring gene testis-specific Y-encoded protein 3-like Neighboring gene gamma-taxilin-like Neighboring gene uncharacterized LOC118356619

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045613.1 Chromosome Y Reference mZalCal1.pri.v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: BCL-6 corepressor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mZalCal1.pri.v2 Primary Assembly

    Genomic

    1. NC_045613.1 Reference mZalCal1.pri.v2 Primary Assembly

      Range
      3031888..3146645 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035725946.1 → XP_035581839.1  LOW QUALITY PROTEIN: BCL-6 corepressor-like

      UniProtKB/TrEMBL
      A0A6P9F779
      Conserved Domains (5) summary
      pfam05109
      Location:445 → 845
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:1565 → 1596
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:1569 → 1660
      Ank_2; Ankyrin repeats (3 copies)
      pfam15808
      Location:1317 → 1515
      BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
      cl21640
      Location:1732 → 1848
      PUFD_like; PCGF Ub-like fold discriminator and related domains
    Nucleotide Protein
    Heading Accession and Version

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